Variant report

Variant	rs12365703
Chromosome Location	chr11:45562785-45562786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHST1-5	chr11:45562693-45562819	ENSG00000254746

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10742762	1.00[ASN][1000 genomes]
rs10742763	1.00[ASN][1000 genomes]
rs10769161	1.00[ASN][1000 genomes]
rs10769162	1.00[ASN][1000 genomes]
rs10838493	1.00[ASN][1000 genomes]
rs10838494	1.00[ASN][1000 genomes]
rs10838495	1.00[ASN][1000 genomes]
rs10838496	1.00[ASN][1000 genomes]
rs10838497	1.00[ASN][1000 genomes]
rs11038524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038530	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038531	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038533	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038538	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038539	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038543	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.87[EUR][1000 genomes]
rs11038552	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038559	1.00[ASN][1000 genomes]
rs11038560	1.00[ASN][1000 genomes]
rs11038563	1.00[ASN][1000 genomes]
rs11038566	1.00[ASN][1000 genomes]
rs11038567	1.00[ASN][1000 genomes]
rs11038568	1.00[ASN][1000 genomes]
rs11038569	1.00[ASN][1000 genomes]
rs11038570	1.00[ASN][1000 genomes]
rs11038571	1.00[ASN][1000 genomes]
rs11038572	1.00[ASN][1000 genomes]
rs11038573	1.00[ASN][1000 genomes]
rs11038575	1.00[ASN][1000 genomes]
rs11038576	1.00[ASN][1000 genomes]
rs11038581	1.00[ASN][1000 genomes]
rs11038582	1.00[ASN][1000 genomes]
rs11038594	1.00[ASN][1000 genomes]
rs11038596	1.00[ASN][1000 genomes]
rs11038598	1.00[ASN][1000 genomes]
rs11038599	1.00[ASN][1000 genomes]
rs11038600	1.00[ASN][1000 genomes]
rs11038601	1.00[ASN][1000 genomes]
rs11038603	1.00[ASN][1000 genomes]
rs11038606	1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs12362568	1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	1.00[ASN][1000 genomes]
rs12363231	1.00[ASN][1000 genomes]
rs12364128	1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	1.00[ASN][1000 genomes]
rs12365436	1.00[ASN][1000 genomes]
rs12366014	1.00[ASN][1000 genomes]
rs1387058	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1488677	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562461	1.00[ASN][1000 genomes]
rs17724240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724446	1.00[ASN][1000 genomes]
rs17786178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786436	1.00[ASN][1000 genomes]
rs2028985	1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	1.00[ASN][1000 genomes]
rs4756007	1.00[ASN][1000 genomes]
rs4756013	1.00[ASN][1000 genomes]
rs4756014	1.00[ASN][1000 genomes]
rs6485637	1.00[ASN][1000 genomes]
rs7104214	1.00[ASN][1000 genomes]
rs7105647	1.00[ASN][1000 genomes]
rs7116428	1.00[ASN][1000 genomes]
rs7121818	1.00[ASN][1000 genomes]
rs7121848	1.00[ASN][1000 genomes]
rs72895235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895273	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896754	1.00[ASN][1000 genomes]
rs72896772	1.00[ASN][1000 genomes]
rs72896789	1.00[ASN][1000 genomes]
rs72898653	1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	1.00[ASN][1000 genomes]
rs72904980	1.00[ASN][1000 genomes]
rs72904984	1.00[ASN][1000 genomes]
rs72904993	1.00[ASN][1000 genomes]
rs72904994	1.00[ASN][1000 genomes]
rs72904997	1.00[ASN][1000 genomes]
rs72910675	1.00[ASN][1000 genomes]
rs72910679	1.00[ASN][1000 genomes]
rs7947626	1.00[ASN][1000 genomes]
rs895718	1.00[ASN][1000 genomes]
rs901907	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45554200-45570600	Weak transcription	Brain Germinal Matrix	brain
2	chr11:45554600-45563000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:45554800-45563000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:45556200-45571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:45559800-45563200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:45560400-45566000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:45561200-45563000	Weak transcription	Fetal Brain Female	brain
8	chr11:45562600-45563000	Weak transcription	Fetal Brain Male	brain

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