Variant report

Variant	rs72896789
Chromosome Location	chr11:45675876-45675877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45673703..45676177-chr11:45681263..45683293,2	K562	blood:
2	chr11:45671225..45673031-chr11:45675062..45677985,2	K562	blood:
3	chr11:45673604..45675879-chr11:45677397..45678906,2	K562	blood:
4	chr11:45658659..45661256-chr11:45675243..45676992,2	K562	blood:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10742762	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	1.00[ASN][1000 genomes]
rs11038528	1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.82[AMR][1000 genomes]
rs11038552	1.00[ASN][1000 genomes]
rs11038559	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362568	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363116	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	1.00[ASN][1000 genomes]
rs17724446	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	1.00[ASN][1000 genomes]
rs17786436	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756013	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899255	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554197	chr11:45673014-45679212	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45665600-45680000	Weak transcription	Gastric	stomach
2	chr11:45669800-45676400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:45669800-45676400	Weak transcription	HUVEC	blood vessel
4	chr11:45669800-45676600	Weak transcription	Left Ventricle	heart
5	chr11:45670000-45680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:45670600-45676600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:45671200-45676200	Weak transcription	Fetal Brain Male	brain
8	chr11:45672600-45676400	Weak transcription	Right Ventricle	heart
9	chr11:45673200-45677000	Weak transcription	Ovary	ovary
10	chr11:45673400-45677000	Weak transcription	Lung	lung
11	chr11:45673600-45676000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:45673600-45677200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:45673800-45676600	Weak transcription	Fetal Brain Female	brain
14	chr11:45673800-45677400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:45674000-45677200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:45674200-45676000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:45674200-45677000	Enhancers	Fetal Stomach	stomach
18	chr11:45674200-45679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:45674400-45676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:45674400-45676400	Weak transcription	Spleen	Spleen
21	chr11:45674400-45677000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:45674600-45676600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr11:45674600-45677000	Weak transcription	HMEC	breast
24	chr11:45674600-45679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:45674800-45676200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:45674800-45676400	Weak transcription	Brain Angular Gyrus	brain
27	chr11:45674800-45676400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:45674800-45676800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:45674800-45676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:45675000-45676000	Weak transcription	Osteobl	bone
31	chr11:45675000-45676200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:45675200-45676400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:45675200-45676600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:45675400-45676600	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:45675400-45676600	Weak transcription	Dnd41	blood
36	chr11:45675600-45676200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:45675600-45677800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:45675600-45679800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:45675800-45676600	Enhancers	Brain Anterior Caudate	brain
40	chr11:45675800-45676600	Weak transcription	Fetal Kidney	kidney
41	chr11:45675800-45677000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:45675800-45677000	Enhancers	Placenta	Placenta
43	chr11:45675800-45677200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr11:45675800-45677400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr11:45675800-45677400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:45675800-45677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links