Variant report

Variant	rs4756014
Chromosome Location	chr11:45694195-45694196
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45693262..45695561-chr11:45696192..45697922,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2210P24.4.1-8	chr11:45693469-45700657	l_471_chr11:45693468-45701603_testes

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10742762	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038528	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038544	1.00[ASN][1000 genomes]
rs11038549	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038550	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038551	0.87[CEU][hapmap]
rs11038552	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038559	1.00[ASN][1000 genomes]
rs11038560	1.00[ASN][1000 genomes]
rs11038563	1.00[ASN][1000 genomes]
rs11038566	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826638	0.82[AFR][1000 genomes]
rs11827784	0.82[AFR][1000 genomes]
rs12360696	0.87[CEU][hapmap]
rs12362568	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363116	1.00[ASN][1000 genomes]
rs12363231	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17724446	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786436	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45478798	0.82[AFR][1000 genomes]
rs45490494	0.82[AFR][1000 genomes]
rs45627537	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.94[EUR][1000 genomes]
rs4756013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899255	1.00[ASN][1000 genomes]
rs72899271	1.00[ASN][1000 genomes]
rs72899280	1.00[ASN][1000 genomes]
rs72904957	1.00[ASN][1000 genomes]
rs72904980	1.00[ASN][1000 genomes]
rs72904984	1.00[ASN][1000 genomes]
rs72904993	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45687200-45699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45688000-45700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:45692200-45694200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:45692400-45694200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:45692800-45694200	Enhancers	Brain Substantia Nigra	brain
6	chr11:45693200-45694200	Enhancers	Brain Angular Gyrus	brain
7	chr11:45693200-45694200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:45693400-45699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:45693800-45699200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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