Variant report

Variant	rs17724446
Chromosome Location	chr11:45626133-45626134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10742762	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038528	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.85[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.87[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.87[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs11038552	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038559	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs12360696	0.87[CEU][hapmap]
rs12362568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[AMR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786178	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786436	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45627537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4756013	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45615000-45626200	Weak transcription	Fetal Brain Male	brain
2	chr11:45624800-45626400	Enhancers	Left Ventricle	heart
3	chr11:45624800-45628600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:45624800-45628800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:45624800-45629400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45625000-45626200	Enhancers	Fetal Muscle Leg	muscle
7	chr11:45625200-45626200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr11:45625200-45626800	Enhancers	Brain Germinal Matrix	brain
9	chr11:45625400-45626200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:45625600-45626200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:45625600-45626200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr11:45625800-45626200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:45625800-45626200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:45625800-45626200	Enhancers	Lung	lung
15	chr11:45625800-45626400	Enhancers	Right Atrium	heart
16	chr11:45625800-45626400	Enhancers	Right Ventricle	heart
17	chr11:45626000-45626200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:45626000-45626200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
19	chr11:45626000-45627800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:45626000-45628000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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