Variant report

Variant	rs895718
Chromosome Location	chr11:45689424-45689425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10742762	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	1.00[ASN][1000 genomes]
rs11038528	1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	1.00[ASN][1000 genomes]
rs11038544	1.00[ASN][1000 genomes]
rs11038549	1.00[ASN][1000 genomes]
rs11038550	1.00[ASN][1000 genomes]
rs11038552	1.00[ASN][1000 genomes]
rs11038559	1.00[ASN][1000 genomes]
rs11038560	1.00[ASN][1000 genomes]
rs11038563	1.00[ASN][1000 genomes]
rs11038566	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826638	0.91[AFR][1000 genomes]
rs11827784	0.82[AFR][1000 genomes]
rs12362568	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363116	1.00[ASN][1000 genomes]
rs12363231	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	1.00[ASN][1000 genomes]
rs17724446	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	1.00[ASN][1000 genomes]
rs17786436	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs41372752	0.84[AFR][1000 genomes]
rs45460198	0.84[AFR][1000 genomes]
rs45478798	0.91[AFR][1000 genomes]
rs45490494	0.91[AFR][1000 genomes]
rs45554232	0.88[AFR][1000 genomes]
rs45627537	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.94[EUR][1000 genomes]
rs4756013	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899255	1.00[ASN][1000 genomes]
rs72899271	1.00[ASN][1000 genomes]
rs72899280	1.00[ASN][1000 genomes]
rs72904957	1.00[ASN][1000 genomes]
rs72904980	1.00[ASN][1000 genomes]
rs72904984	1.00[ASN][1000 genomes]
rs72904993	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45687200-45699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45687600-45689600	Bivalent Enhancer	Fetal Stomach	stomach
3	chr11:45687600-45692000	Weak transcription	Pancreas	Pancrea
4	chr11:45687800-45692400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:45688000-45700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:45688800-45692400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:45688800-45692800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45688800-45692800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:45688800-45692800	Weak transcription	Brain Substantia Nigra	brain
10	chr11:45688800-45693200	Weak transcription	Brain Angular Gyrus	brain
11	chr11:45688800-45693200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:45689000-45690600	Enhancers	Fetal Muscle Leg	muscle
13	chr11:45689000-45692200	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:45689000-45693200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:45689400-45689600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr11:45689400-45689800	Bivalent Enhancer	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links