Variant report

Variant	rs45460198
Chromosome Location	chr11:45680569-45680570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45678783..45681662-chr11:45685006..45688205,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175264	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11826638	0.92[AFR][1000 genomes]
rs11827784	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41372752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45478798	0.92[AFR][1000 genomes]
rs45490494	0.92[AFR][1000 genomes]
rs45525032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45554232	0.90[AFR][1000 genomes]
rs57339371	1.00[AMR][1000 genomes]
rs60550474	1.00[AMR][1000 genomes]
rs61044391	1.00[AMR][1000 genomes]
rs895718	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45677800-45680600	Weak transcription	Brain Germinal Matrix	brain
2	chr11:45678200-45684200	Enhancers	HUVEC	blood vessel
3	chr11:45678400-45685200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:45678600-45683600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:45679000-45680800	Enhancers	Fetal Muscle Leg	muscle
6	chr11:45679000-45684200	Enhancers	Dnd41	blood
7	chr11:45679200-45681800	Enhancers	Right Ventricle	heart
8	chr11:45679200-45681800	Enhancers	Spleen	Spleen
9	chr11:45679400-45681800	Enhancers	Left Ventricle	heart
10	chr11:45679400-45682600	Bivalent Enhancer	Placenta	Placenta
11	chr11:45679400-45682800	Enhancers	Brain Substantia Nigra	brain
12	chr11:45679600-45680600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:45679600-45681400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:45679600-45681600	Enhancers	Right Atrium	heart
15	chr11:45679600-45683200	Enhancers	Brain Angular Gyrus	brain
16	chr11:45679600-45685400	Enhancers	Ovary	ovary
17	chr11:45679800-45680600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:45679800-45680600	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:45679800-45680600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:45679800-45680800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:45679800-45680800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:45679800-45680800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:45679800-45680800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
24	chr11:45679800-45680800	Enhancers	HSMM	muscle
25	chr11:45679800-45680800	Enhancers	NH-A	brain
26	chr11:45679800-45681000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:45679800-45681000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:45679800-45681000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr11:45679800-45681000	Bivalent Enhancer	Adipose Nuclei	Adipose
30	chr11:45679800-45681000	Bivalent Enhancer	Fetal Lung	lung
31	chr11:45679800-45681200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:45679800-45684000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:45680000-45680600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:45680000-45680600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:45680000-45680600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr11:45680000-45680800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:45680000-45680800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:45680000-45680800	Bivalent Enhancer	Fetal Intestine Small	intestine
39	chr11:45680000-45680800	Bivalent Enhancer	Fetal Thymus	thymus
40	chr11:45680000-45680800	Enhancers	Gastric	stomach
41	chr11:45680000-45681000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:45680000-45681200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:45680000-45681200	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr11:45680000-45681200	Bivalent Enhancer	Fetal Stomach	stomach
45	chr11:45680000-45681400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:45680000-45684200	Enhancers	Brain Anterior Caudate	brain
47	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
48	chr11:45680200-45680600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:45680200-45680600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:45680200-45680600	Enhancers	NHLF	lung

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