Variant report

Variant	rs11827784
Chromosome Location	chr11:45692326-45692327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10769161	0.84[YRI][hapmap]
rs11826638	0.82[AFR][1000 genomes]
rs2028985	0.82[AFR][1000 genomes]
rs41372752	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45460198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45478798	0.82[AFR][1000 genomes]
rs45490494	0.82[AFR][1000 genomes]
rs45525032	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4756014	0.82[AFR][1000 genomes]
rs57339371	1.00[AMR][1000 genomes]
rs60550474	1.00[AMR][1000 genomes]
rs61044391	1.00[AMR][1000 genomes]
rs7117026	0.81[AFR][1000 genomes]
rs895718	0.82[AFR][1000 genomes]
rs895730	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv467870	chr11:45684557-45757401	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv554199	chr11:45684557-45757401	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45687200-45699000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:45687800-45692400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:45688000-45700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:45688800-45692400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:45688800-45692800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45688800-45692800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:45688800-45692800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:45688800-45693200	Weak transcription	Brain Angular Gyrus	brain
9	chr11:45688800-45693200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:45689000-45693200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:45691600-45692400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:45692000-45694000	Enhancers	Pancreas	Pancrea
13	chr11:45692200-45693200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:45692200-45694200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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