Variant report

Variant	rs11826638
Chromosome Location	chr11:45681744-45681745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45673703..45676177-chr11:45681263..45683293,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11827784	0.91[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs1562461	0.83[AFR][1000 genomes]
rs2028985	0.82[AFR][1000 genomes]
rs28364620	0.88[MKK][hapmap]
rs41372752	0.92[AFR][1000 genomes]
rs45460198	0.92[AFR][1000 genomes]
rs45478798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45490494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45525032	0.86[AFR][1000 genomes]
rs45554232	0.97[AFR][1000 genomes]
rs4756014	0.82[AFR][1000 genomes]
rs895718	0.91[AFR][1000 genomes]
rs895730	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45678200-45684200	Enhancers	HUVEC	blood vessel
2	chr11:45678400-45685200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:45678600-45683600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:45679000-45684200	Enhancers	Dnd41	blood
5	chr11:45679200-45681800	Enhancers	Right Ventricle	heart
6	chr11:45679200-45681800	Enhancers	Spleen	Spleen
7	chr11:45679400-45681800	Enhancers	Left Ventricle	heart
8	chr11:45679400-45682600	Bivalent Enhancer	Placenta	Placenta
9	chr11:45679400-45682800	Enhancers	Brain Substantia Nigra	brain
10	chr11:45679600-45683200	Enhancers	Brain Angular Gyrus	brain
11	chr11:45679600-45685400	Enhancers	Ovary	ovary
12	chr11:45679800-45684000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:45680000-45684200	Enhancers	Brain Anterior Caudate	brain
14	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
15	chr11:45680200-45682200	Weak transcription	Lung	lung
16	chr11:45680200-45686000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:45680400-45682000	Enhancers	Fetal Brain Female	brain
18	chr11:45680600-45682200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:45680600-45682200	Enhancers	Brain Germinal Matrix	brain
20	chr11:45680600-45682200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
21	chr11:45680800-45682000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:45680800-45682200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:45680800-45682200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:45680800-45684000	Weak transcription	HSMM	muscle
25	chr11:45680800-45684400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:45680800-45684600	Weak transcription	Gastric	stomach
27	chr11:45680800-45684800	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr11:45681000-45682200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:45681000-45682200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:45681000-45682800	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:45681000-45684200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:45681000-45684200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:45681200-45682200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:45681200-45682600	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:45681200-45682800	Enhancers	Fetal Stomach	stomach
36	chr11:45681200-45683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:45681400-45683400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:45681600-45683800	Bivalent Enhancer	Brain Hippocampus Middle	brain
39	chr11:45681600-45685600	Weak transcription	Right Atrium	heart

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