Variant report

Variant	rs11038544
Chromosome Location	chr11:45585121-45585122
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10742762	0.87[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	1.00[ASN][1000 genomes]
rs10769161	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10769162	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10838493	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038417	0.85[CEU][hapmap]
rs11038443	0.82[CEU][hapmap]
rs11038522	0.87[CEU][hapmap]
rs11038524	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038525	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038528	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038531	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038533	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038538	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038539	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038543	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038552	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038559	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	1.00[ASN][1000 genomes]
rs11038603	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs1107209	0.87[CEU][hapmap]
rs12360696	1.00[CEU][hapmap]
rs12362568	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365467	0.87[CEU][hapmap]
rs12365703	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366014	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447573	1.00[AMR][1000 genomes]
rs1488677	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562461	1.00[ASN][1000 genomes]
rs17724240	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724446	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17786039	0.87[CEU][hapmap]
rs17786178	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786436	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.83[AMR][1000 genomes]
rs4756013	1.00[ASN][1000 genomes]
rs4756014	1.00[ASN][1000 genomes]
rs6485637	1.00[ASN][1000 genomes]
rs7104214	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	0.87[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	1.00[ASN][1000 genomes]
rs7121818	0.87[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895236	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895273	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896754	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	1.00[ASN][1000 genomes]
rs901907	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45582200-45585200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:45582200-45585200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45582600-45585200	Weak transcription	Right Atrium	heart
4	chr11:45582600-45588000	Weak transcription	Fetal Brain Female	brain
5	chr11:45584000-45590400	Weak transcription	Fetal Brain Male	brain
6	chr11:45584200-45585200	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:45584200-45585600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:45584400-45585200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:45584400-45585200	Enhancers	Brain Germinal Matrix	brain
10	chr11:45584800-45585600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:45584800-45585800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:45584800-45585800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:45585000-45585600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:45585000-45586000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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