Variant report

Variant	rs11038552
Chromosome Location	chr11:45602697-45602698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:45601696-45602796	PFSK-1	brain:	n/a	chr11:45602146-45602155 chr11:45602146-45602166 chr11:45602146-45602166 chr11:45602152-45602166
2	REST	chr11:45601711-45602753	ECC-1	luminal epithelium:	n/a	chr11:45602146-45602155 chr11:45602146-45602166 chr11:45602146-45602166 chr11:45602152-45602166
3	REST	chr11:45601777-45602714	ECC-1	luminal epithelium:	n/a	chr11:45602146-45602155 chr11:45602146-45602166 chr11:45602146-45602166 chr11:45602152-45602166
4	REST	chr11:45601651-45602953	HL-60	blood:	n/a	chr11:45602146-45602155 chr11:45602146-45602166 chr11:45602146-45602166 chr11:45602152-45602166

Variant related genes	Relation type
ENSG00000254514	TF binding region

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10742762	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs10742763	1.00[ASN][1000 genomes]
rs10769161	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs10769162	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs10838493	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038443	1.00[CEU][hapmap]
rs11038522	1.00[CEU][hapmap]
rs11038524	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038525	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038528	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038530	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038531	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038533	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038538	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038539	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038543	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11038559	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	1.00[ASN][1000 genomes]
rs11038563	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	1.00[ASN][1000 genomes]
rs11038567	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	1.00[ASN][1000 genomes]
rs11038582	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	1.00[ASN][1000 genomes]
rs11038596	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	1.00[ASN][1000 genomes]
rs11038601	1.00[ASN][1000 genomes]
rs11038603	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs1107209	1.00[CEU][hapmap]
rs12360696	1.00[CEU][hapmap]
rs12362568	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12366014	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447573	0.83[AMR][1000 genomes]
rs1488677	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562461	1.00[ASN][1000 genomes]
rs17724240	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724446	1.00[ASN][1000 genomes]
rs17786039	1.00[CEU][hapmap]
rs17786178	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786436	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	1.00[ASN][1000 genomes]
rs4756007	1.00[ASN][1000 genomes]
rs4756013	1.00[ASN][1000 genomes]
rs4756014	1.00[ASN][1000 genomes]
rs6485637	1.00[ASN][1000 genomes]
rs7104214	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs7116428	1.00[ASN][1000 genomes]
rs7121818	0.82[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895236	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895273	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896754	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	1.00[ASN][1000 genomes]
rs72898653	1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	1.00[ASN][1000 genomes]
rs72904994	1.00[ASN][1000 genomes]
rs72904997	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	1.00[ASN][1000 genomes]
rs901907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45599200-45606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45600200-45607400	Weak transcription	Brain Germinal Matrix	brain

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