Variant report

Variant	rs10742762
Chromosome Location	chr11:45680931-45680932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45678783..45681662-chr11:45685006..45688205,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175264	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10742763	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038528	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.85[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.87[CEU][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.87[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs11038552	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038559	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038566	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360696	0.87[CEU][hapmap]
rs12362568	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363116	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17724446	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786436	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756013	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899255	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45678200-45684200	Enhancers	HUVEC	blood vessel
2	chr11:45678400-45685200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:45678600-45683600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:45679000-45684200	Enhancers	Dnd41	blood
5	chr11:45679200-45681800	Enhancers	Right Ventricle	heart
6	chr11:45679200-45681800	Enhancers	Spleen	Spleen
7	chr11:45679400-45681800	Enhancers	Left Ventricle	heart
8	chr11:45679400-45682600	Bivalent Enhancer	Placenta	Placenta
9	chr11:45679400-45682800	Enhancers	Brain Substantia Nigra	brain
10	chr11:45679600-45681400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:45679600-45681600	Enhancers	Right Atrium	heart
12	chr11:45679600-45683200	Enhancers	Brain Angular Gyrus	brain
13	chr11:45679600-45685400	Enhancers	Ovary	ovary
14	chr11:45679800-45681000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:45679800-45681000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr11:45679800-45681000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:45679800-45681000	Bivalent Enhancer	Adipose Nuclei	Adipose
18	chr11:45679800-45681000	Bivalent Enhancer	Fetal Lung	lung
19	chr11:45679800-45681200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:45679800-45684000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:45680000-45681000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:45680000-45681200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:45680000-45681200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr11:45680000-45681200	Bivalent Enhancer	Fetal Stomach	stomach
25	chr11:45680000-45681400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:45680000-45684200	Enhancers	Brain Anterior Caudate	brain
27	chr11:45680000-45688000	Enhancers	Fetal Brain Male	brain
28	chr11:45680200-45681000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:45680200-45681000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:45680200-45681200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:45680200-45682200	Weak transcription	Lung	lung
32	chr11:45680200-45686000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:45680400-45681000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:45680400-45681000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:45680400-45681000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr11:45680400-45681200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:45680400-45681600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:45680400-45682000	Enhancers	Fetal Brain Female	brain
39	chr11:45680600-45681000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:45680600-45681000	Bivalent Enhancer	Fetal Intestine Large	intestine
41	chr11:45680600-45681200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:45680600-45681200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr11:45680600-45682200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:45680600-45682200	Enhancers	Brain Germinal Matrix	brain
45	chr11:45680600-45682200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
46	chr11:45680800-45681000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
47	chr11:45680800-45681000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr11:45680800-45681200	Enhancers	Esophagus	oesophagus
49	chr11:45680800-45681400	Enhancers	Brain Hippocampus Middle	brain
50	chr11:45680800-45682000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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