Variant report

Variant	rs11038566
Chromosome Location	chr11:45627085-45627086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10742762	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742763	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769161	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769162	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838493	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838494	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838495	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838496	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838497	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	1.00[ASN][1000 genomes]
rs11038528	1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038544	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038549	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038550	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11038551	0.82[AMR][1000 genomes]
rs11038552	1.00[ASN][1000 genomes]
rs11038559	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038560	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038563	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038570	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038571	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038572	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038573	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038575	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038576	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038581	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038582	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038596	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038598	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038599	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038600	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038601	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038603	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038606	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs12362568	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364128	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365436	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365703	1.00[ASN][1000 genomes]
rs12366014	1.00[ASN][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1447573	0.91[AMR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17724240	1.00[ASN][1000 genomes]
rs17724446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786178	1.00[ASN][1000 genomes]
rs17786436	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028985	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275597	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45627537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756007	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756011	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4756013	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756014	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485637	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7104214	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105647	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116428	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121818	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121848	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896772	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896789	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898653	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899271	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72899280	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72904957	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904980	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904984	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904997	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910675	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910679	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947626	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895718	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs901907	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45624800-45628600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:45624800-45628800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45624800-45629400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45626000-45627800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:45626000-45628000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:45626200-45627800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:45626200-45627800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45626200-45628000	Weak transcription	Lung	lung
9	chr11:45626200-45629000	Enhancers	Fetal Brain Male	brain
10	chr11:45626400-45628000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:45626400-45629200	Weak transcription	Right Ventricle	heart
12	chr11:45626400-45629600	Weak transcription	Right Atrium	heart
13	chr11:45626600-45628400	Enhancers	Fetal Muscle Leg	muscle
14	chr11:45626800-45627800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:45626800-45627800	Weak transcription	Brain Germinal Matrix	brain
16	chr11:45626800-45628000	Weak transcription	Fetal Brain Female	brain
17	chr11:45627000-45627400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:45627000-45627600	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links