Variant report

Variant	rs12366014
Chromosome Location	chr11:45559793-45559794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:45559752-45560248	H1-hESC	embryonic stem cell:	n/a	chr11:45559991-45560010 chr11:45559992-45560006
2	CTCF	chr11:45559760-45559910	HCM	heart:	n/a	n/a

Variant related genes	Relation type
ENSG00000254746	TF binding region

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10160472	1.00[CEU][hapmap]
rs10160502	1.00[CEU][hapmap]
rs10501315	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10742762	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10742763	1.00[ASN][1000 genomes]
rs10769161	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10769162	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10838479	0.89[EUR][1000 genomes]
rs10838493	1.00[ASN][1000 genomes]
rs10838494	1.00[ASN][1000 genomes]
rs10838495	1.00[ASN][1000 genomes]
rs10838496	1.00[ASN][1000 genomes]
rs10838497	1.00[ASN][1000 genomes]
rs11038417	1.00[CEU][hapmap]
rs11038429	0.81[EUR][1000 genomes]
rs11038431	0.84[EUR][1000 genomes]
rs11038432	0.84[EUR][1000 genomes]
rs11038433	0.84[EUR][1000 genomes]
rs11038434	0.85[EUR][1000 genomes]
rs11038435	0.85[EUR][1000 genomes]
rs11038437	0.85[EUR][1000 genomes]
rs11038442	0.85[EUR][1000 genomes]
rs11038443	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11038444	0.85[EUR][1000 genomes]
rs11038450	0.87[EUR][1000 genomes]
rs11038451	0.87[EUR][1000 genomes]
rs11038455	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038456	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038457	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038458	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038459	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11038461	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038462	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038465	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038466	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038467	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038469	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038471	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11038472	0.84[EUR][1000 genomes]
rs11038473	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038474	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038475	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038477	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038479	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038481	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038482	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038483	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038485	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038486	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038487	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038492	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038493	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038494	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038495	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038496	0.89[EUR][1000 genomes]
rs11038497	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038498	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11038510	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038515	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038516	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038518	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038520	0.94[EUR][1000 genomes]
rs11038522	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038524	1.00[ASN][1000 genomes]
rs11038525	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038528	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038530	1.00[ASN][1000 genomes]
rs11038531	1.00[ASN][1000 genomes]
rs11038533	1.00[ASN][1000 genomes]
rs11038538	1.00[ASN][1000 genomes]
rs11038539	1.00[ASN][1000 genomes]
rs11038543	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038544	1.00[ASN][1000 genomes]
rs11038549	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038550	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038551	1.00[CEU][hapmap]
rs11038552	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11038559	1.00[ASN][1000 genomes]
rs11038560	1.00[ASN][1000 genomes]
rs11038563	1.00[ASN][1000 genomes]
rs11038566	1.00[ASN][1000 genomes]
rs11038567	1.00[ASN][1000 genomes]
rs11038568	1.00[ASN][1000 genomes]
rs11038569	1.00[ASN][1000 genomes]
rs11038570	1.00[ASN][1000 genomes]
rs11038571	1.00[ASN][1000 genomes]
rs11038572	1.00[ASN][1000 genomes]
rs11038573	1.00[ASN][1000 genomes]
rs11038575	1.00[ASN][1000 genomes]
rs11038576	1.00[ASN][1000 genomes]
rs11038581	1.00[ASN][1000 genomes]
rs11038582	1.00[ASN][1000 genomes]
rs11038594	1.00[ASN][1000 genomes]
rs11038596	1.00[ASN][1000 genomes]
rs11038598	1.00[ASN][1000 genomes]
rs11038599	1.00[ASN][1000 genomes]
rs11038600	1.00[ASN][1000 genomes]
rs11038601	1.00[ASN][1000 genomes]
rs11038603	1.00[ASN][1000 genomes]
rs11038606	1.00[ASN][1000 genomes]
rs11038615	1.00[ASN][1000 genomes]
rs1107209	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12360696	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12361372	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12362568	1.00[ASN][1000 genomes]
rs12362984	1.00[ASN][1000 genomes]
rs12363116	1.00[ASN][1000 genomes]
rs12363231	1.00[ASN][1000 genomes]
rs12363740	0.87[EUR][1000 genomes]
rs12364128	1.00[ASN][1000 genomes]
rs12364278	0.87[EUR][1000 genomes]
rs12364661	0.87[EUR][1000 genomes]
rs12364847	1.00[ASN][1000 genomes]
rs12365421	1.00[ASN][1000 genomes]
rs12365430	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12365436	1.00[ASN][1000 genomes]
rs12365467	1.00[CEU][hapmap]
rs12365703	1.00[ASN][1000 genomes]
rs12365982	0.89[EUR][1000 genomes]
rs1387058	1.00[ASN][1000 genomes]
rs1488668	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1488669	0.89[EUR][1000 genomes]
rs1488670	0.89[EUR][1000 genomes]
rs1488677	1.00[ASN][1000 genomes]
rs1562461	1.00[ASN][1000 genomes]
rs17723819	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17724032	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17724086	0.89[EUR][1000 genomes]
rs17724240	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17724446	1.00[ASN][1000 genomes]
rs17785901	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17786039	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17786178	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17786436	1.00[ASN][1000 genomes]
rs1844150	0.87[EUR][1000 genomes]
rs2028985	1.00[ASN][1000 genomes]
rs275597	1.00[ASN][1000 genomes]
rs45627537	1.00[ASN][1000 genomes]
rs4756007	1.00[ASN][1000 genomes]
rs4756013	1.00[ASN][1000 genomes]
rs4756014	1.00[ASN][1000 genomes]
rs6485637	1.00[ASN][1000 genomes]
rs7104214	1.00[ASN][1000 genomes]
rs7105647	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs7116428	1.00[ASN][1000 genomes]
rs7121818	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs7121848	1.00[ASN][1000 genomes]
rs72893316	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72893332	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72893337	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72893356	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72895235	1.00[ASN][1000 genomes]
rs72895236	1.00[ASN][1000 genomes]
rs72895273	1.00[ASN][1000 genomes]
rs72896754	1.00[ASN][1000 genomes]
rs72896772	1.00[ASN][1000 genomes]
rs72896789	1.00[ASN][1000 genomes]
rs72897475	0.84[EUR][1000 genomes]
rs72898653	1.00[ASN][1000 genomes]
rs72898676	1.00[ASN][1000 genomes]
rs72899255	1.00[ASN][1000 genomes]
rs72899271	1.00[ASN][1000 genomes]
rs72899280	1.00[ASN][1000 genomes]
rs72899480	0.85[EUR][1000 genomes]
rs72899488	0.87[EUR][1000 genomes]
rs72901403	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901422	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901426	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901447	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901450	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901459	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72901500	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72903035	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72903086	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72903094	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72904957	1.00[ASN][1000 genomes]
rs72904980	1.00[ASN][1000 genomes]
rs72904984	1.00[ASN][1000 genomes]
rs72904993	1.00[ASN][1000 genomes]
rs72904994	1.00[ASN][1000 genomes]
rs72904997	1.00[ASN][1000 genomes]
rs72905021	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72905025	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72905092	0.89[EUR][1000 genomes]
rs72905093	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906922	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906947	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72910675	1.00[ASN][1000 genomes]
rs72910679	1.00[ASN][1000 genomes]
rs7947626	1.00[ASN][1000 genomes]
rs895718	1.00[ASN][1000 genomes]
rs901907	1.00[ASN][1000 genomes]
rs971897	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45540200-45560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45554200-45570600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:45554600-45563000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:45554800-45563000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:45556200-45571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:45558600-45559800	Weak transcription	Fetal Brain Female	brain
7	chr11:45558800-45562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:45559000-45560800	Enhancers	Osteobl	bone
9	chr11:45559000-45561200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:45559200-45560400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:45559200-45560600	Bivalent Enhancer	Fetal Stomach	stomach
12	chr11:45559200-45561400	Enhancers	Fetal Brain Male	brain
13	chr11:45559400-45560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:45559600-45559800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:45559600-45559800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:45559600-45560400	Enhancers	Brain Anterior Caudate	brain
17	chr11:45559600-45560400	Enhancers	Fetal Muscle Trunk	muscle

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