Variant report

Variant	rs61360793
Chromosome Location	chr11:45391303-45391304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12276630	0.82[AFR][1000 genomes]
rs4073406	1.00[AMR][1000 genomes]
rs56684421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58968412	1.00[AMR][1000 genomes]
rs61049987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72897458	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45388000-45392200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:45388400-45392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45388400-45395800	Weak transcription	Liver	Liver
4	chr11:45388800-45392600	Weak transcription	Brain Anterior Caudate	brain
5	chr11:45389000-45392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:45389000-45392600	Weak transcription	Spleen	Spleen
7	chr11:45389400-45392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:45389600-45392600	Weak transcription	Lung	lung
9	chr11:45391000-45391400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:45391000-45391400	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:45391000-45391400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:45391000-45391400	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr11:45391000-45391600	Enhancers	Ovary	ovary
14	chr11:45391000-45391800	Enhancers	Fetal Brain Male	brain
15	chr11:45391000-45391800	Enhancers	Fetal Brain Female	brain
16	chr11:45391200-45391400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:45391200-45391400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr11:45391200-45391400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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