Variant report

Variant	rs61055969
Chromosome Location	chr8:9943874-9943875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097035	1.00[AMR][1000 genomes]
rs11985767	1.00[AMR][1000 genomes]
rs11988116	1.00[AMR][1000 genomes]
rs11989502	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994045	1.00[AMR][1000 genomes]
rs11996848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3989134	1.00[AMR][1000 genomes]
rs487816	1.00[AMR][1000 genomes]
rs541362	1.00[AMR][1000 genomes]
rs658620	1.00[AMR][1000 genomes]
rs6995352	1.00[AMR][1000 genomes]
rs73526802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
3	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
4	chr8:9936200-9944200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:9938800-9944800	Weak transcription	Primary B cells from cord blood	blood
6	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
7	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
8	chr8:9940600-9944200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:9941400-9944400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:9941600-9947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:9941800-9944600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:9941800-9944800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:9942000-9947200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:9942200-9944600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:9942200-9944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:9943800-9944800	Enhancers	NHEK	skin
17	chr8:9943800-9945800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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