Variant report
| Variant | rs487816 |
|---|---|
| Chromosome Location | chr8:9803283-9803284 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:9803039..9805546-chr8:9809803..9812661,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10097035 | 1.00[AMR][1000 genomes] |
| rs11985767 | 1.00[AMR][1000 genomes] |
| rs11988116 | 1.00[AMR][1000 genomes] |
| rs11989502 | 1.00[AMR][1000 genomes] |
| rs11994045 | 1.00[AMR][1000 genomes] |
| rs11996848 | 1.00[AMR][1000 genomes] |
| rs3989134 | 1.00[AMR][1000 genomes] |
| rs522704 | 1.00[AMR][1000 genomes] |
| rs541362 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61055969 | 1.00[AMR][1000 genomes] |
| rs623046 | 1.00[AMR][1000 genomes] |
| rs635341 | 1.00[AMR][1000 genomes] |
| rs658620 | 1.00[AMR][1000 genomes] |
| rs666853 | 1.00[AMR][1000 genomes] |
| rs667249 | 1.00[AMR][1000 genomes] |
| rs6995352 | 1.00[AMR][1000 genomes] |
| rs73526802 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530864 | chr8:9097498-9914548 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023834 | chr8:9798072-9904788 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:9801800-9803800 | Enhancers | Fetal Brain Male | brain |
