Variant report

Variant	rs666853
Chromosome Location	chr8:9776038-9776039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11985767	1.00[AMR][1000 genomes]
rs11994045	1.00[AMR][1000 genomes]
rs3989134	1.00[AMR][1000 genomes]
rs487816	1.00[AMR][1000 genomes]
rs522704	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541362	1.00[AMR][1000 genomes]
rs623046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635341	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs658620	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9768600-9776600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:9773800-9777400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:9774200-9776200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:9774400-9777400	Active TSS	Brain Anterior Caudate	brain
5	chr8:9775000-9777400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
6	chr8:9775200-9777000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr8:9775200-9777000	Active TSS	Fetal Brain Female	brain
8	chr8:9775200-9777200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:9775800-9776600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chr8:9775800-9777000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:9775800-9777000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:9775800-9777200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr8:9776000-9776200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
14	chr8:9776000-9776400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr8:9776000-9777200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr8:9776000-9777400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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