Variant report

Variant	rs658620
Chromosome Location	chr8:9791649-9791650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr8:9791056-9791940	H1-hESC	embryonic stem cell:	n/a	chr8:9791254-9791263 chr8:9791251-9791263
2	E2F6	chr8:9791188-9791732	H1-hESC	embryonic stem cell:	n/a	chr8:9791254-9791263 chr8:9791251-9791263
3	MXI1	chr8:9790828-9791845	SK-N-SH	brain:	n/a	n/a
4	MAX	chr8:9791127-9791830	H1-hESC	embryonic stem cell:	n/a	chr8:9791262-9791272 chr8:9791255-9791265
5	RAD21	chr8:9791187-9791673	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr8:9791271-9791673	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr8:9791109-9791669	H1-hESC	embryonic stem cell:	n/a	chr8:9791262-9791272 chr8:9791255-9791265
8	MXI1	chr8:9791188-9791654	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr8:9791274-9791674	H1-hESC	embryonic stem cell:	n/a	n/a
10	E2F6	chr8:9791196-9791752	A549	lung:	n/a	chr8:9791254-9791263 chr8:9791251-9791263
11	MAX	chr8:9791180-9791708	A549	lung:	n/a	chr8:9791262-9791272 chr8:9791255-9791265
12	SP4	chr8:9791132-9791693	H1-hESC	embryonic stem cell:	n/a	chr8:9791252-9791268 chr8:9791250-9791266 chr8:9791252-9791263 chr8:9791239-9791250
13	RAD21	chr8:9791161-9791650	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000238496	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10097035	1.00[AMR][1000 genomes]
rs11985767	1.00[AMR][1000 genomes]
rs11988116	1.00[AMR][1000 genomes]
rs11989502	1.00[AMR][1000 genomes]
rs11994045	1.00[AMR][1000 genomes]
rs11996848	1.00[AMR][1000 genomes]
rs3989134	1.00[AMR][1000 genomes]
rs487816	1.00[AMR][1000 genomes]
rs522704	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541362	1.00[AMR][1000 genomes]
rs61055969	1.00[AMR][1000 genomes]
rs623046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs635341	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs666853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667249	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6995352	1.00[AMR][1000 genomes]
rs73526802	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9791000-9791800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr8:9791000-9791800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr8:9791000-9791800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr8:9791000-9791800	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr8:9791000-9791800	Active TSS	Brain Anterior Caudate	brain
6	chr8:9791000-9791800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr8:9791000-9791800	Active TSS	Brain Hippocampus Middle	brain
8	chr8:9791000-9791800	Enhancers	Fetal Brain Male	brain
9	chr8:9791000-9791800	Active TSS	Fetal Brain Female	brain
10	chr8:9791000-9791800	Bivalent/Poised TSS	A549	lung
11	chr8:9791200-9791800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:9791200-9791800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr8:9791200-9791800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr8:9791200-9791800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr8:9791200-9791800	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr8:9791200-9791800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:9791400-9791800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr8:9791400-9791800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr8:9791400-9791800	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr8:9791400-9791800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:9791400-9791800	Active TSS	K562	blood
22	chr8:9791400-9792400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:9791600-9791800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:9791600-9791800	Active TSS	Brain Germinal Matrix	brain

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