Variant report

Variant	rs6106527
Chromosome Location	chr20:22592307-22592308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6106529	0.80[AFR][1000 genomes]
rs6106531	0.80[AFR][1000 genomes]
rs6106532	0.90[AFR][1000 genomes]
rs6113734	1.00[AMR][1000 genomes]
rs6113736	0.90[AFR][1000 genomes]
rs6113737	0.90[AFR][1000 genomes]
rs6113739	0.80[AFR][1000 genomes]
rs6113740	0.80[AFR][1000 genomes]
rs6113741	0.85[AFR][1000 genomes]
rs6113744	0.81[AFR][1000 genomes]
rs6113747	0.90[AFR][1000 genomes]
rs6113749	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22588800-22592400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr20:22591200-22594400	Enhancers	Stomach Mucosa	stomach
3	chr20:22592000-22593000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr20:22592200-22592600	Weak transcription	Gastric	stomach
5	chr20:22592200-22592800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr20:22592200-22592800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:22592200-22592800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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