Variant report

Variant	rs6113744
Chromosome Location	chr20:22607970-22607971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6106527	0.81[AFR][1000 genomes]
rs6106529	0.80[AFR][1000 genomes]
rs6106531	0.80[AFR][1000 genomes]
rs6106532	0.90[AFR][1000 genomes]
rs6113736	0.90[AFR][1000 genomes]
rs6113737	0.90[AFR][1000 genomes]
rs6113739	0.80[AFR][1000 genomes]
rs6113740	0.80[AFR][1000 genomes]
rs6113741	0.85[AFR][1000 genomes]
rs6113747	0.90[AFR][1000 genomes]
rs6113749	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22603800-22611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:22607200-22610400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr20:22607200-22610400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:22607400-22608000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:22607400-22610200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr20:22607400-22611200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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