Variant report

Variant	rs6113740
Chromosome Location	chr20:22599906-22599907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs6106527	0.92[MKK][hapmap];0.80[AFR][1000 genomes]
rs6106529	1.00[AFR][1000 genomes]
rs6106531	1.00[AFR][1000 genomes]
rs6106532	0.89[AFR][1000 genomes]
rs6106541	0.89[AFR][1000 genomes]
rs6106542	0.89[AFR][1000 genomes]
rs6106544	0.84[AFR][1000 genomes]
rs6113736	0.89[AFR][1000 genomes]
rs6113737	0.89[AFR][1000 genomes]
rs6113739	1.00[AFR][1000 genomes]
rs6113741	0.85[AFR][1000 genomes]
rs6113744	0.80[AFR][1000 genomes]
rs6113747	0.89[AFR][1000 genomes]
rs6113749	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22595000-22601800	Enhancers	Stomach Mucosa	stomach
2	chr20:22596400-22600200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:22598200-22600600	Enhancers	A549	lung
4	chr20:22598200-22603600	Weak transcription	Spleen	Spleen
5	chr20:22599000-22601800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22599600-22600600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr20:22599600-22600800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr20:22599600-22602000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr20:22599800-22600200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr20:22599800-22600600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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