Variant report

Variant	rs6106616
Chromosome Location	chr20:23175755-23175756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1005856	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1099456	0.82[AMR][1000 genomes]
rs11696272	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11896	1.00[ASN][1000 genomes]
rs1338943	0.89[ASN][1000 genomes]
rs1538445	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1538446	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1856470	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2024897	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4813483	0.89[ASN][1000 genomes]
rs6036338	0.82[EUR][1000 genomes]
rs6048590	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6048591	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6048592	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6048595	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6048612	0.81[EUR][1000 genomes]
rs6048615	0.80[EUR][1000 genomes]
rs6048618	0.80[EUR][1000 genomes]
rs6048619	0.80[EUR][1000 genomes]
rs6076035	0.98[ASN][1000 genomes]
rs6076038	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6076039	0.81[EUR][1000 genomes]
rs6076040	0.93[ASN][1000 genomes]
rs6083030	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083031	1.00[ASN][1000 genomes]
rs6083032	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083033	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083036	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083038	0.81[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083043	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6083044	0.96[ASN][1000 genomes]
rs6083047	0.95[ASN][1000 genomes]
rs6083050	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6106615	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6106617	0.90[ASN][1000 genomes]
rs6106619	0.89[ASN][1000 genomes]
rs6113992	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6114001	0.93[ASN][1000 genomes]
rs6114004	0.90[ASN][1000 genomes]
rs6132573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6132576	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6132577	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62206882	0.81[AMR][1000 genomes]
rs62206883	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750652	0.82[AMR][1000 genomes]
rs750653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8118328	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844924	0.83[AMR][1000 genomes]
rs844929	0.84[AMR][1000 genomes]
rs844932	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs844934	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs844935	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs844936	0.84[AMR][1000 genomes]
rs844937	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs844938	0.82[AMR][1000 genomes]
rs844939	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs844940	0.82[AMR][1000 genomes]
rs844941	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs844942	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs867909	0.80[EUR][1000 genomes]
rs870225	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2756735	chr20:23146607-23179604	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv3454220	chr20:23168207-23176428	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3454221	chr20:23168245-23176414	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3521213	chr20:23168248-23176382	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3521215	chr20:23168249-23176399	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3454222	chr20:23168272-23176425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv3454223	chr20:23168278-23176396	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3454224	chr20:23168278-23176396	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3521214	chr20:23168280-23176368	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv3521216	chr20:23168280-23176382	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv179251	chr20:23168344-23176309	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3511472	chr20:23168752-23177950	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv17036	chr20:23168907-23176009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	esv3511473	chr20:23169102-23177300	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	esv3511475	chr20:23169102-23177300	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23169600-23180400	Weak transcription	Spleen	Spleen
2	chr20:23170800-23176200	Weak transcription	GM12878-XiMat	blood
3	chr20:23174200-23176000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr20:23174200-23177200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr20:23174400-23177200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr20:23174600-23180200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr20:23175200-23177000	Weak transcription	Pancreas	Pancrea
8	chr20:23175200-23179000	Weak transcription	K562	blood
9	chr20:23175200-23181200	Weak transcription	Placenta	Placenta
10	chr20:23175200-23181200	Weak transcription	Left Ventricle	heart
11	chr20:23175200-23181200	Weak transcription	Right Ventricle	heart

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