Variant report

Variant	rs844935
Chromosome Location	chr20:23161807-23161808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23159717..23162468-chr20:23166819..23168990,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-2	chr20:23161692-23161853	XLOC_013489

Variant related genes	Relation type
ENSG00000230387	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1005856	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1099456	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11696272	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs11896	0.99[ASN][1000 genomes]
rs1338943	0.88[ASN][1000 genomes]
rs1538445	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1538446	0.83[AMR][1000 genomes]
rs2024897	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4813483	0.88[ASN][1000 genomes]
rs6048590	0.83[AMR][1000 genomes]
rs6076035	0.99[ASN][1000 genomes]
rs6076038	0.83[AMR][1000 genomes]
rs6076040	0.92[ASN][1000 genomes]
rs6083030	0.90[MEX][hapmap];0.83[AMR][1000 genomes]
rs6083031	0.99[ASN][1000 genomes]
rs6083032	0.83[AMR][1000 genomes]
rs6083033	0.83[AMR][1000 genomes]
rs6083036	0.83[AMR][1000 genomes]
rs6083038	0.95[MEX][hapmap];0.83[AMR][1000 genomes]
rs6083044	0.95[ASN][1000 genomes]
rs6083047	0.94[ASN][1000 genomes]
rs6083050	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.91[ASN][1000 genomes]
rs6106615	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.99[ASN][1000 genomes]
rs6106616	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6106617	0.89[ASN][1000 genomes]
rs6106619	0.89[ASN][1000 genomes]
rs6113992	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6114001	0.92[ASN][1000 genomes]
rs6114004	0.89[ASN][1000 genomes]
rs6132573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6132576	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62206882	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62206883	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750652	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs750653	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8118328	0.83[AMR][1000 genomes]
rs844924	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs844929	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844932	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844934	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844936	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844937	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844938	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844939	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844940	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs844941	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs844942	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	esv2756735	chr20:23146607-23179604	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23159000-23162000	Enhancers	Placenta	Placenta
2	chr20:23159600-23162000	Enhancers	Dnd41	blood
3	chr20:23160600-23162000	Enhancers	Fetal Muscle Leg	muscle
4	chr20:23160600-23162000	Enhancers	Left Ventricle	heart
5	chr20:23161400-23166400	Weak transcription	Spleen	Spleen
6	chr20:23161800-23167000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr20:23161800-23167200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr20:23161800-23167600	Weak transcription	HSMM	muscle
9	chr20:23161800-23168000	Weak transcription	Right Ventricle	heart

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