Variant report

Variant	rs6111108
Chromosome Location	chr20:16405682-16405683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11907369	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs16997589	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16997600	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs6105597	1.00[AMR][1000 genomes]
rs6111110	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6111114	0.83[AFR][1000 genomes]
rs6111115	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs7363515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73898713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16384000-16432600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr20:16387000-16406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr20:16387400-16411800	Weak transcription	Colonic Mucosa	Colon
4	chr20:16391600-16406400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:16391600-16410800	Weak transcription	Thymus	Thymus
6	chr20:16391800-16409800	Weak transcription	Brain Angular Gyrus	brain
7	chr20:16391800-16414600	Weak transcription	Colon Smooth Muscle	Colon
8	chr20:16392000-16406400	Weak transcription	Brain Anterior Caudate	brain
9	chr20:16392000-16407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr20:16392200-16412800	Weak transcription	Fetal Kidney	kidney
11	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:16392400-16411600	Weak transcription	Brain Substantia Nigra	brain
13	chr20:16393800-16408200	Weak transcription	Small Intestine	intestine
14	chr20:16395200-16411400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr20:16396000-16411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr20:16396200-16412800	Weak transcription	NHDF-Ad	bronchial
17	chr20:16396400-16411000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr20:16396600-16406800	Weak transcription	Placenta	Placenta
19	chr20:16397400-16412000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr20:16398200-16417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr20:16398200-16431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr20:16400000-16440000	Weak transcription	NHEK	skin
23	chr20:16400200-16414000	Weak transcription	Fetal Brain Female	brain
24	chr20:16401000-16414200	Weak transcription	Fetal Brain Male	brain
25	chr20:16401200-16408200	Weak transcription	HSMMtube	muscle
26	chr20:16401200-16417000	Weak transcription	Brain Germinal Matrix	brain
27	chr20:16402400-16408200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr20:16402600-16410200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr20:16402600-16412200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr20:16402800-16412800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr20:16402800-16412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr20:16402800-16413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr20:16403000-16413000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr20:16403200-16406400	Weak transcription	Psoas Muscle	Psoas
35	chr20:16403200-16408200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr20:16403200-16408600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr20:16403200-16409200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr20:16403200-16409200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr20:16403600-16410600	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr20:16404000-16406400	Strong transcription	Liver	Liver
41	chr20:16404000-16406600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr20:16404000-16410200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr20:16404000-16410200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr20:16404000-16410800	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr20:16404000-16411000	Strong transcription	Adipose Nuclei	Adipose
46	chr20:16404200-16406800	Strong transcription	Fetal Stomach	stomach
47	chr20:16404200-16407200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr20:16404200-16407200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr20:16404200-16407200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr20:16404200-16407200	Strong transcription	Fetal Muscle Leg	muscle

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