Variant report

Variant	rs6111115
Chromosome Location	chr20:16411243-16411244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11905881	1.00[MEX][hapmap]
rs11906521	1.00[MEX][hapmap]
rs11907369	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12106043	1.00[AMR][1000 genomes]
rs16997589	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs16997600	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16997664	1.00[AMR][1000 genomes]
rs58046157	1.00[AMR][1000 genomes]
rs6105599	1.00[MEX][hapmap]
rs6105600	1.00[MEX][hapmap]
rs6105604	1.00[MEX][hapmap]
rs6111108	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs6111110	1.00[ASW][hapmap];1.00[MEX][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs6111114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6111129	1.00[MEX][hapmap]
rs6111139	1.00[AMR][1000 genomes]
rs6111156	1.00[AMR][1000 genomes]
rs7363515	0.85[AFR][1000 genomes]
rs73901129	1.00[AMR][1000 genomes]
rs73901135	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16384000-16432600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr20:16387400-16411800	Weak transcription	Colonic Mucosa	Colon
3	chr20:16391800-16414600	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:16392200-16412800	Weak transcription	Fetal Kidney	kidney
5	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:16392400-16411600	Weak transcription	Brain Substantia Nigra	brain
7	chr20:16395200-16411400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr20:16396000-16411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr20:16396200-16412800	Weak transcription	NHDF-Ad	bronchial
10	chr20:16397400-16412000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:16398200-16417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:16398200-16431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:16400000-16440000	Weak transcription	NHEK	skin
14	chr20:16400200-16414000	Weak transcription	Fetal Brain Female	brain
15	chr20:16401000-16414200	Weak transcription	Fetal Brain Male	brain
16	chr20:16401200-16417000	Weak transcription	Brain Germinal Matrix	brain
17	chr20:16402600-16412200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr20:16402800-16412800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr20:16402800-16412800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr20:16402800-16413600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr20:16403000-16413000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr20:16404200-16411400	Strong transcription	Primary T cells from cord blood	blood
23	chr20:16404200-16419200	Weak transcription	Fetal Heart	heart
24	chr20:16404600-16414000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr20:16404800-16412800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr20:16404800-16414200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr20:16404800-16419800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr20:16404800-16425000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr20:16405000-16411400	Weak transcription	Right Ventricle	heart
30	chr20:16405000-16419200	Weak transcription	A549	lung
31	chr20:16405400-16414000	Weak transcription	Spleen	Spleen
32	chr20:16405400-16434600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr20:16405600-16411600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr20:16405600-16431000	Weak transcription	Pancreas	Pancrea
35	chr20:16406800-16414200	Weak transcription	Fetal Stomach	stomach
36	chr20:16407200-16411600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr20:16407200-16412800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr20:16407200-16414800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr20:16408000-16420200	Weak transcription	Primary B cells from cord blood	blood
40	chr20:16408400-16419200	Weak transcription	Psoas Muscle	Psoas
41	chr20:16408400-16424400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr20:16408600-16411400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr20:16408600-16411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr20:16408600-16411600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr20:16408600-16412200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr20:16408600-16419600	Weak transcription	Fetal Intestine Small	intestine
47	chr20:16408600-16439200	Weak transcription	Brain Hippocampus Middle	brain
48	chr20:16408800-16424600	Weak transcription	Small Intestine	intestine
49	chr20:16409000-16431200	Weak transcription	Aorta	Aorta
50	chr20:16409200-16439400	Weak transcription	Rectal Smooth Muscle	rectum

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