The 2.0 version of rSNPBase

Variant report

Variant rs12106043
Chromosome Location chr20:16508662-16508663
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16467000-16508800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr20:16472800-16517400 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr20:16480600-16509400 Weak transcription K562 blood
4 chr20:16485800-16521200 Weak transcription Right Ventricle heart
5 chr20:16488800-16508800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr20:16488800-16509200 Weak transcription Small Intestine intestine
7 chr20:16489000-16511000 Weak transcription Colonic Mucosa Colon
8 chr20:16489200-16512200 Weak transcription Gastric stomach
9 chr20:16489200-16521000 Weak transcription Spleen Spleen
10 chr20:16489400-16510800 Weak transcription Lung lung
11 chr20:16489400-16517600 Weak transcription Pancreas Pancrea
12 chr20:16490400-16510200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr20:16491800-16511000 Weak transcription Esophagus oesophagus
14 chr20:16492000-16509800 Weak transcription Rectal Smooth Muscle rectum
15 chr20:16492400-16517800 Weak transcription Colon Smooth Muscle Colon
16 chr20:16492600-16528800 Weak transcription Primary B cells from cord blood blood
17 chr20:16493000-16521200 Weak transcription Liver Liver
18 chr20:16493600-16508800 Weak transcription Fetal Lung lung
19 chr20:16493600-16509400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr20:16493600-16516200 Weak transcription Primary hematopoietic stem cells blood
21 chr20:16496000-16509400 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr20:16497400-16509600 Weak transcription Brain Inferior Temporal Lobe brain
23 chr20:16497600-16509200 Weak transcription Brain Angular Gyrus brain
24 chr20:16497600-16521600 Weak transcription Brain Hippocampus Middle brain
25 chr20:16501400-16509000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr20:16501400-16511800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr20:16504800-16508800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr20:16505800-16509200 Strong transcription Primary T cells from cord blood blood
29 chr20:16506200-16517800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr20:16506400-16509400 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr20:16506400-16510400 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr20:16506400-16510400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
33 chr20:16506400-16517400 Weak transcription Adipose Nuclei Adipose
34 chr20:16507000-16509600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr20:16507200-16508800 Enhancers Osteobl bone
36 chr20:16507200-16509600 Enhancers Fetal Muscle Leg muscle
37 chr20:16507200-16509600 Enhancers Ovary ovary
38 chr20:16507200-16509600 Enhancers HSMM muscle
39 chr20:16507200-16509800 Enhancers Skeletal Muscle Female skeletal muscle
40 chr20:16507400-16509800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr20:16507400-16527000 Weak transcription Primary B cells from peripheral blood blood
42 chr20:16507600-16509400 Enhancers HSMMtube muscle
43 chr20:16507600-16509600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr20:16507600-16511000 Enhancers Fetal Intestine Large intestine
45 chr20:16507800-16509000 Strong transcription Aorta Aorta
46 chr20:16507800-16509800 Enhancers Hela-S3 cervix
47 chr20:16507800-16510000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr20:16507800-16511000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr20:16507800-16511400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr20:16507800-16512000 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015