The 2.0 version of rSNPBase

Variant report

Variant rs6111139
Chromosome Location chr20:16437955-16437956
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16392200-16453000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr20:16400000-16440000 Weak transcription NHEK skin
3 chr20:16408600-16439200 Weak transcription Brain Hippocampus Middle brain
4 chr20:16409200-16439400 Weak transcription Rectal Smooth Muscle rectum
5 chr20:16409200-16443600 Weak transcription Gastric stomach
6 chr20:16410200-16455800 Weak transcription Duodenum Mucosa Duodenum
7 chr20:16410200-16473200 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr20:16410600-16455400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr20:16411200-16439200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr20:16411200-16440000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr20:16411200-16455200 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr20:16414800-16443600 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr20:16420200-16440000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr20:16420400-16453000 Weak transcription Left Ventricle heart
15 chr20:16420800-16471400 Weak transcription Primary hematopoietic stem cells blood
16 chr20:16425200-16439400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr20:16425200-16440000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr20:16425800-16443400 Weak transcription Ovary ovary
19 chr20:16426600-16439800 Weak transcription Adipose Nuclei Adipose
20 chr20:16426800-16439400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr20:16427200-16439400 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr20:16427600-16438200 Weak transcription HSMMtube muscle
23 chr20:16429000-16443400 Weak transcription Psoas Muscle Psoas
24 chr20:16429400-16440000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr20:16431400-16443400 Weak transcription Pancreas Pancrea
26 chr20:16431400-16454600 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr20:16431400-16455400 Weak transcription Fetal Lung lung
28 chr20:16431400-16456000 Weak transcription Liver Liver
29 chr20:16431400-16463000 Weak transcription Aorta Aorta
30 chr20:16431400-16508200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr20:16431600-16450800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr20:16431800-16438600 Weak transcription Brain Anterior Caudate brain
33 chr20:16431800-16439800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr20:16431800-16458400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr20:16431800-16462200 Weak transcription Primary T cells from cord blood blood
36 chr20:16432400-16440000 Weak transcription Brain Inferior Temporal Lobe brain
37 chr20:16432600-16440400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr20:16433000-16438200 Weak transcription Fetal Muscle Leg muscle
39 chr20:16433000-16456400 Weak transcription Primary B cells from cord blood blood
40 chr20:16434000-16438000 Weak transcription HSMM muscle
41 chr20:16436600-16443600 Weak transcription Fetal Intestine Small intestine
42 chr20:16436600-16445200 Weak transcription Fetal Intestine Large intestine
43 chr20:16436600-16464800 Weak transcription Small Intestine intestine
44 chr20:16437600-16453000 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015