The 2.0 version of rSNPBase

Variant report

Variant rs73901129
Chromosome Location chr20:16550431-16550432
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16509200-16553000 Weak transcription Primary T cells from cord blood blood
2 chr20:16534600-16553600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr20:16536000-16551400 Weak transcription Right Ventricle heart
4 chr20:16537200-16552000 Weak transcription Stomach Smooth Muscle stomach
5 chr20:16537400-16551200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr20:16537400-16553400 Weak transcription Aorta Aorta
7 chr20:16537600-16551400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr20:16537600-16551400 Weak transcription Esophagus oesophagus
9 chr20:16537600-16551800 Weak transcription Adipose Nuclei Adipose
10 chr20:16538400-16550600 Weak transcription NHEK skin
11 chr20:16539200-16551400 Weak transcription Lung lung
12 chr20:16541800-16551800 Weak transcription Left Ventricle heart
13 chr20:16543200-16551400 Weak transcription Psoas Muscle Psoas
14 chr20:16544200-16552600 Weak transcription A549 lung
15 chr20:16544400-16553000 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr20:16544600-16553000 Weak transcription Primary hematopoietic stem cells blood
17 chr20:16545600-16551800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr20:16545800-16551800 Weak transcription Gastric stomach
19 chr20:16546600-16551600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr20:16546600-16551800 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr20:16546600-16553400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr20:16546800-16552800 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr20:16547000-16552000 Weak transcription Fetal Muscle Leg muscle
24 chr20:16547200-16551400 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr20:16547200-16552200 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr20:16547200-16552800 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr20:16547200-16552800 Weak transcription HUES48 Cell Line embryonic stem cell
28 chr20:16547200-16553000 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr20:16548200-16551400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr20:16548800-16550800 Enhancers Rectal Mucosa Donor 29 rectum
31 chr20:16548800-16551600 Enhancers Rectal Mucosa Donor 31 rectum
32 chr20:16548800-16552000 Enhancers Duodenum Mucosa Duodenum
33 chr20:16549600-16552800 Enhancers HepG2 liver
34 chr20:16549800-16550800 Enhancers Liver Liver
35 chr20:16549800-16551400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr20:16549800-16551800 Weak transcription Small Intestine intestine
37 chr20:16550000-16550600 Active TSS Pancreatic Islets Pancreatic Islet
38 chr20:16550000-16551800 Weak transcription Colonic Mucosa Colon
39 chr20:16550000-16553000 Weak transcription Stomach Mucosa stomach
40 chr20:16550000-16553200 Weak transcription Fetal Kidney kidney
41 chr20:16550200-16550800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
42 chr20:16550200-16551400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr20:16550200-16551400 Weak transcription Pancreas Pancrea
44 chr20:16550200-16551800 Weak transcription Fetal Intestine Small intestine
45 chr20:16550400-16550800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr20:16550400-16552200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr20:16550400-16553000 Weak transcription Fetal Intestine Large intestine
48 chr20:16550400-16553200 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015