Variant report

Variant	rs6111143
Chromosome Location	chr20:16444742-16444743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1008506	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485555	0.86[AFR][1000 genomes]
rs10485556	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12479497	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12480660	0.86[AFR][1000 genomes]
rs12480678	0.86[AFR][1000 genomes]
rs17673447	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17673673	0.86[AFR][1000 genomes]
rs17740473	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17741318	0.86[AFR][1000 genomes]
rs17741475	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2144896	1.00[AFR][1000 genomes]
rs2180472	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34122290	1.00[AFR][1000 genomes]
rs34550969	1.00[AFR][1000 genomes]
rs34761754	1.00[AFR][1000 genomes]
rs4813218	1.00[AFR][1000 genomes]
rs56072219	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56363883	1.00[AFR][1000 genomes]
rs56402523	1.00[AFR][1000 genomes]
rs6034499	0.86[AFR][1000 genomes]
rs6080271	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7263619	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs73597772	0.86[AFR][1000 genomes]
rs8118656	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:16410200-16455800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr20:16410200-16473200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr20:16410600-16455400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr20:16411200-16455200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr20:16420400-16453000	Weak transcription	Left Ventricle	heart
7	chr20:16420800-16471400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr20:16431400-16454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:16431400-16455400	Weak transcription	Fetal Lung	lung
10	chr20:16431400-16456000	Weak transcription	Liver	Liver
11	chr20:16431400-16463000	Weak transcription	Aorta	Aorta
12	chr20:16431400-16508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:16431600-16450800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:16431800-16458400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr20:16431800-16462200	Weak transcription	Primary T cells from cord blood	blood
16	chr20:16433000-16456400	Weak transcription	Primary B cells from cord blood	blood
17	chr20:16436600-16445200	Weak transcription	Fetal Intestine Large	intestine
18	chr20:16436600-16464800	Weak transcription	Small Intestine	intestine
19	chr20:16437600-16453000	Weak transcription	Esophagus	oesophagus
20	chr20:16440000-16455000	Weak transcription	HSMM	muscle
21	chr20:16440400-16452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr20:16440400-16454800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr20:16440400-16454800	Weak transcription	Adipose Nuclei	Adipose
24	chr20:16440400-16455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr20:16440400-16468800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr20:16440600-16445400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr20:16440600-16452600	Weak transcription	NHEK	skin
28	chr20:16440600-16452800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr20:16440600-16452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:16440600-16454600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr20:16440600-16454800	Weak transcription	Brain Hippocampus Middle	brain
32	chr20:16440800-16454400	Weak transcription	Colon Smooth Muscle	Colon
33	chr20:16440800-16455400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr20:16440800-16456000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr20:16441200-16452600	Weak transcription	Stomach Mucosa	stomach
36	chr20:16441200-16454600	Weak transcription	Fetal Muscle Leg	muscle
37	chr20:16443200-16447400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr20:16443600-16468600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr20:16443800-16445800	Weak transcription	Fetal Intestine Small	intestine
40	chr20:16443800-16447600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr20:16443800-16447600	Weak transcription	Pancreas	Pancrea
42	chr20:16443800-16447800	Weak transcription	Psoas Muscle	Psoas
43	chr20:16443800-16453200	Weak transcription	Gastric	stomach
44	chr20:16443800-16469600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr20:16443800-16469600	Weak transcription	Lung	lung
46	chr20:16444000-16466800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr20:16444600-16450800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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