Variant report

Variant	rs34122290
Chromosome Location	chr20:16402167-16402168
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1008506	0.86[AFR][1000 genomes]
rs10485553	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10485555	0.86[AFR][1000 genomes]
rs10485556	0.86[AFR][1000 genomes]
rs12479497	0.86[AFR][1000 genomes]
rs12480660	0.86[AFR][1000 genomes]
rs12480678	0.86[AFR][1000 genomes]
rs12624346	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12624938	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17671618	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17671977	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17672161	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17673447	0.86[AFR][1000 genomes]
rs17673673	0.86[AFR][1000 genomes]
rs17740473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17741318	0.86[AFR][1000 genomes]
rs17741475	0.86[AFR][1000 genomes]
rs2144896	1.00[AFR][1000 genomes]
rs2180472	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34550969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34761754	1.00[AFR][1000 genomes]
rs4813218	1.00[AFR][1000 genomes]
rs56072219	0.86[AFR][1000 genomes]
rs56329134	0.97[EUR][1000 genomes]
rs56363883	1.00[AFR][1000 genomes]
rs56402523	1.00[AFR][1000 genomes]
rs6034476	0.96[EUR][1000 genomes]
rs6034499	0.86[AFR][1000 genomes]
rs6080271	1.00[AFR][1000 genomes]
rs6111116	0.99[EUR][1000 genomes]
rs6111143	1.00[AFR][1000 genomes]
rs61664184	0.99[EUR][1000 genomes]
rs7262082	0.96[EUR][1000 genomes]
rs7268027	0.96[EUR][1000 genomes]
rs73597772	0.86[AFR][1000 genomes]
rs73898731	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73898736	0.97[EUR][1000 genomes]
rs73898746	0.96[EUR][1000 genomes]
rs8118656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8120353	0.99[EUR][1000 genomes]
rs8121801	0.99[EUR][1000 genomes]
rs8125188	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16372600-16404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr20:16378000-16404400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr20:16384000-16432600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:16385200-16404200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr20:16385400-16404200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr20:16386200-16404400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr20:16386400-16404200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:16387000-16403000	Weak transcription	Fetal Stomach	stomach
9	chr20:16387000-16404200	Weak transcription	Gastric	stomach
10	chr20:16387000-16406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr20:16387400-16404000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr20:16387400-16404400	Weak transcription	Esophagus	oesophagus
13	chr20:16387400-16411800	Weak transcription	Colonic Mucosa	Colon
14	chr20:16389600-16404200	Weak transcription	A549	lung
15	chr20:16391600-16406400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:16391600-16410800	Weak transcription	Thymus	Thymus
17	chr20:16391800-16404200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr20:16391800-16404400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr20:16391800-16409800	Weak transcription	Brain Angular Gyrus	brain
20	chr20:16391800-16414600	Weak transcription	Colon Smooth Muscle	Colon
21	chr20:16392000-16404200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr20:16392000-16405600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr20:16392000-16406400	Weak transcription	Brain Anterior Caudate	brain
24	chr20:16392000-16407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr20:16392200-16404200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr20:16392200-16412800	Weak transcription	Fetal Kidney	kidney
27	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr20:16392400-16404200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr20:16392400-16411600	Weak transcription	Brain Substantia Nigra	brain
30	chr20:16393000-16403600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr20:16393800-16408200	Weak transcription	Small Intestine	intestine
32	chr20:16395200-16411400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr20:16396000-16411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr20:16396200-16412800	Weak transcription	NHDF-Ad	bronchial
35	chr20:16396400-16411000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr20:16396600-16404400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr20:16396600-16406800	Weak transcription	Placenta	Placenta
38	chr20:16396800-16402400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr20:16397400-16412000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr20:16397600-16403400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr20:16397800-16404200	Weak transcription	Spleen	Spleen
42	chr20:16398000-16404200	Weak transcription	Right Ventricle	heart
43	chr20:16398200-16417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr20:16398200-16431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr20:16398400-16402400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr20:16398400-16404200	Weak transcription	HepG2	liver
47	chr20:16398400-16404600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr20:16399200-16404200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr20:16399200-16404200	Weak transcription	Left Ventricle	heart
50	chr20:16399400-16404200	Weak transcription	Pancreas	Pancrea

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