The 2.0 version of rSNPBase

Variant report

Variant rs8125188
Chromosome Location chr20:16418729-16418730
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16384000-16432600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr20:16392200-16453000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr20:16398200-16431000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr20:16400000-16440000 Weak transcription NHEK skin
5 chr20:16404200-16419200 Weak transcription Fetal Heart heart
6 chr20:16404800-16419800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr20:16404800-16425000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr20:16405000-16419200 Weak transcription A549 lung
9 chr20:16405400-16434600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr20:16405600-16431000 Weak transcription Pancreas Pancrea
11 chr20:16408000-16420200 Weak transcription Primary B cells from cord blood blood
12 chr20:16408400-16419200 Weak transcription Psoas Muscle Psoas
13 chr20:16408400-16424400 Weak transcription Primary T cells fromperipheralblood blood
14 chr20:16408600-16419600 Weak transcription Fetal Intestine Small intestine
15 chr20:16408600-16439200 Weak transcription Brain Hippocampus Middle brain
16 chr20:16408800-16424600 Weak transcription Small Intestine intestine
17 chr20:16409000-16431200 Weak transcription Aorta Aorta
18 chr20:16409200-16439400 Weak transcription Rectal Smooth Muscle rectum
19 chr20:16409200-16443600 Weak transcription Gastric stomach
20 chr20:16409600-16431000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr20:16409800-16419400 Weak transcription Primary hematopoietic stem cells blood
22 chr20:16409800-16419600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr20:16410000-16419200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr20:16410000-16419200 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr20:16410200-16419200 Weak transcription Left Ventricle heart
26 chr20:16410200-16419600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr20:16410200-16420000 Weak transcription Fetal Intestine Large intestine
28 chr20:16410200-16424400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr20:16410200-16437400 Weak transcription Esophagus oesophagus
30 chr20:16410200-16455800 Weak transcription Duodenum Mucosa Duodenum
31 chr20:16410200-16473200 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr20:16410400-16424600 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr20:16410400-16431000 Weak transcription Liver Liver
34 chr20:16410600-16425200 Weak transcription Stomach Smooth Muscle stomach
35 chr20:16410600-16455400 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr20:16411000-16424400 Weak transcription Adipose Nuclei Adipose
37 chr20:16411200-16439200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr20:16411200-16440000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr20:16411200-16455200 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr20:16411400-16419800 Weak transcription Primary T cells from cord blood blood
41 chr20:16414400-16424600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr20:16414800-16421000 Weak transcription Fetal Brain Male brain
43 chr20:16414800-16424400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr20:16414800-16443600 Weak transcription ES-I3 Cell Line embryonic stem cell
45 chr20:16417000-16431000 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr20:16418400-16419600 Enhancers HSMMtube muscle
47 chr20:16418400-16420400 Enhancers Fetal Muscle Leg muscle
48 chr20:16418600-16420200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015