Variant report

Variant	rs34761754
Chromosome Location	chr20:16384077-16384078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1008506	0.86[AFR][1000 genomes]
rs10485555	0.86[AFR][1000 genomes]
rs10485556	0.86[AFR][1000 genomes]
rs12479497	0.86[AFR][1000 genomes]
rs12480660	0.86[AFR][1000 genomes]
rs12480678	0.86[AFR][1000 genomes]
rs17673447	0.86[AFR][1000 genomes]
rs17673673	0.86[AFR][1000 genomes]
rs17740473	1.00[AFR][1000 genomes]
rs17741318	0.86[AFR][1000 genomes]
rs17741475	0.86[AFR][1000 genomes]
rs2144896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180472	1.00[AFR][1000 genomes]
rs34122290	1.00[AFR][1000 genomes]
rs34550969	1.00[AFR][1000 genomes]
rs4813218	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4814479	0.92[EUR][1000 genomes]
rs56072219	0.86[AFR][1000 genomes]
rs56085833	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56132807	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56363883	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56368069	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56402523	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6034499	0.86[AFR][1000 genomes]
rs6080271	1.00[AFR][1000 genomes]
rs6111143	1.00[AFR][1000 genomes]
rs73597772	0.86[AFR][1000 genomes]
rs8118656	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr20:16343600-16384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr20:16345000-16391200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr20:16345400-16391000	Weak transcription	Brain Germinal Matrix	brain
5	chr20:16346600-16393600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr20:16347600-16392000	Weak transcription	Fetal Kidney	kidney
7	chr20:16350000-16384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr20:16350800-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:16353000-16384200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr20:16355400-16385200	Weak transcription	Brain Substantia Nigra	brain
11	chr20:16356000-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr20:16357800-16385400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr20:16359800-16387800	Weak transcription	Placenta	Placenta
14	chr20:16360600-16385200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr20:16360800-16385000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr20:16360800-16385200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr20:16364600-16385400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr20:16366400-16391400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr20:16367200-16387800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr20:16372200-16389400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr20:16372400-16389200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr20:16372600-16388200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr20:16372600-16404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr20:16372800-16384200	Weak transcription	Esophagus	oesophagus
25	chr20:16372800-16385400	Weak transcription	Spleen	Spleen
26	chr20:16373200-16384400	Weak transcription	NHEK	skin
27	chr20:16373400-16384200	Weak transcription	Colonic Mucosa	Colon
28	chr20:16375400-16392600	Weak transcription	NH-A	brain
29	chr20:16375400-16396400	Weak transcription	Stomach Mucosa	stomach
30	chr20:16377000-16384400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr20:16377000-16389400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr20:16378000-16384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr20:16378000-16385400	Weak transcription	Pancreas	Pancrea
34	chr20:16378000-16388000	Weak transcription	HSMM	muscle
35	chr20:16378000-16388200	Weak transcription	Osteobl	bone
36	chr20:16378000-16391200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr20:16378000-16404400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr20:16378200-16384400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr20:16378200-16385600	Weak transcription	Brain Angular Gyrus	brain
40	chr20:16378600-16385600	Weak transcription	Colon Smooth Muscle	Colon
41	chr20:16378600-16388400	Weak transcription	Fetal Brain Female	brain
42	chr20:16378600-16391200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr20:16378800-16391200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr20:16378800-16393400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr20:16379000-16385400	Weak transcription	Fetal Lung	lung
46	chr20:16379000-16392800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr20:16379200-16395800	Weak transcription	NHDF-Ad	bronchial
48	chr20:16379600-16385200	Weak transcription	Right Ventricle	heart
49	chr20:16379800-16387200	Strong transcription	Primary T cells from cord blood	blood
50	chr20:16379800-16388200	Strong transcription	Stomach Smooth Muscle	stomach

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