Variant report

Variant	rs61122411
Chromosome Location	chr4:102872517-102872518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55816416	1.00[AFR][1000 genomes]
rs58852816	1.00[AFR][1000 genomes]
rs59405697	1.00[AFR][1000 genomes]
rs73834509	1.00[AFR][1000 genomes]
rs73834510	1.00[AFR][1000 genomes]
rs73834515	1.00[AFR][1000 genomes]
rs73834527	1.00[AFR][1000 genomes]
rs73834530	1.00[AFR][1000 genomes]
rs73834533	1.00[AFR][1000 genomes]
rs73834535	1.00[AFR][1000 genomes]
rs73834536	1.00[AFR][1000 genomes]
rs73834538	1.00[AFR][1000 genomes]
rs73834540	1.00[AFR][1000 genomes]
rs73834548	1.00[AFR][1000 genomes]
rs73836621	1.00[AFR][1000 genomes]
rs73836640	1.00[AFR][1000 genomes]
rs73836641	1.00[AFR][1000 genomes]
rs73836642	1.00[AFR][1000 genomes]
rs73836645	1.00[AFR][1000 genomes]
rs73836646	1.00[AFR][1000 genomes]
rs73836650	1.00[AFR][1000 genomes]
rs73836657	1.00[AFR][1000 genomes]
rs73836675	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752360	chr4:102790822-102888822	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102860800-102873600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:102866200-102875400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:102866600-102874200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:102866800-102874200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:102869400-102889200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:102869800-102872800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:102870200-102872800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:102870400-102875600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:102872000-102873200	Weak transcription	Primary B cells from cord blood	blood
10	chr4:102872000-102874400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:102872200-102873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:102872200-102874000	Weak transcription	A549	lung
13	chr4:102872200-102874400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:102872200-102874800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:102872200-102875200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:102872200-102883400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:102872400-102873800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:102872400-102873800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:102872400-102874400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:102872400-102874800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:102872400-102875200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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