Variant report

Variant	rs73834535
Chromosome Location	chr4:102899739-102899740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:102899654-102899781	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102889946..102892052-chr4:102899600..102901567,2	MCF-7	breast:

Variant related genes	Relation type
BANK1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55816416	1.00[AFR][1000 genomes]
rs58852816	1.00[AFR][1000 genomes]
rs59405697	1.00[AFR][1000 genomes]
rs61122411	1.00[AFR][1000 genomes]
rs73834509	1.00[AFR][1000 genomes]
rs73834510	1.00[AFR][1000 genomes]
rs73834515	1.00[AFR][1000 genomes]
rs73834527	1.00[AFR][1000 genomes]
rs73834530	1.00[AFR][1000 genomes]
rs73834533	1.00[AFR][1000 genomes]
rs73834536	1.00[AFR][1000 genomes]
rs73834538	1.00[AFR][1000 genomes]
rs73834540	1.00[AFR][1000 genomes]
rs73834548	1.00[AFR][1000 genomes]
rs73836621	1.00[AFR][1000 genomes]
rs73836640	1.00[AFR][1000 genomes]
rs73836641	1.00[AFR][1000 genomes]
rs73836642	1.00[AFR][1000 genomes]
rs73836645	1.00[AFR][1000 genomes]
rs73836646	1.00[AFR][1000 genomes]
rs73836650	1.00[AFR][1000 genomes]
rs73836657	1.00[AFR][1000 genomes]
rs73836675	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102894000-102905200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:102894200-102900600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:102896600-102899800	Enhancers	Hela-S3	cervix
4	chr4:102898600-102899800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:102898800-102902600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:102898800-102902600	Weak transcription	HMEC	breast
7	chr4:102898800-102902800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:102898800-102905000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:102899000-102902600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:102899000-102902600	Weak transcription	NHEK	skin
11	chr4:102899200-102900400	Weak transcription	HUVEC	blood vessel
12	chr4:102899200-102902800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links