Variant report

Variant	rs61123979
Chromosome Location	chr7:106787736-106787737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:106418412..106420272-chr7:106785269..106788096,2	K562	blood:
2	chr7:106785985..106788632-chr7:106807421..106810040,3	K562	blood:
3	chr7:106685221..106688860-chr7:106786297..106789878,4	K562	blood:
4	chr7:106685233..106687642-chr7:106786297..106788782,2	K562	blood:
5	chr7:106785772..106788697-chr7:106791053..106792877,2	K562	blood:
6	chr7:106771612..106774194-chr7:106787555..106789941,2	K562	blood:
7	chr7:106751220..106753946-chr7:106786479..106788942,2	K562	blood:
8	chr7:106785402..106788167-chr7:106788520..106790659,2	K562	blood:
9	chr7:106787472..106790452-chr7:106792123..106795407,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243193	Chromatin interaction
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17153965	1.00[AMR][1000 genomes]
rs56726619	1.00[AMR][1000 genomes]
rs56867358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56907291	1.00[AMR][1000 genomes]
rs57774882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860874	1.00[AMR][1000 genomes]
rs59169077	1.00[AMR][1000 genomes]
rs60972363	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61005518	1.00[AMR][1000 genomes]
rs61091872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61297311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466161	1.00[AMR][1000 genomes]
rs6943016	1.00[AMR][1000 genomes]
rs6946848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955667	1.00[AMR][1000 genomes]
rs6955968	1.00[AMR][1000 genomes]
rs6963190	0.88[AFR][1000 genomes]
rs6967752	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971571	1.00[AMR][1000 genomes]
rs6975065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787027	1.00[AMR][1000 genomes]
rs7790812	1.00[AMR][1000 genomes]
rs7795905	1.00[AMR][1000 genomes]
rs7809874	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969172	1.00[AMR][1000 genomes]
rs9969363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:106779800-106790800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:106780000-106807800	Weak transcription	Fetal Heart	heart
7	chr7:106780200-106787800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:106780200-106792000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:106780200-106792200	Weak transcription	Fetal Brain Female	brain
10	chr7:106782000-106788000	Weak transcription	HUVEC	blood vessel
11	chr7:106782000-106795400	Weak transcription	Pancreas	Pancrea
12	chr7:106782400-106788200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:106782600-106808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:106782800-106787800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:106782800-106807800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:106783600-106807600	Weak transcription	Fetal Stomach	stomach
17	chr7:106783800-106788400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:106784200-106802600	Strong transcription	K562	blood
19	chr7:106785400-106808000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr7:106785600-106787800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:106785600-106787800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:106785800-106790800	Weak transcription	Fetal Lung	lung
23	chr7:106785800-106807600	Weak transcription	Fetal Kidney	kidney
24	chr7:106786800-106788400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:106787200-106788000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:106787200-106788800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:106787400-106787800	Active TSS	A549	lung
28	chr7:106787400-106788400	Enhancers	Adipose Nuclei	Adipose
29	chr7:106787400-106791800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:106787400-106792000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:106787400-106805800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:106787600-106787800	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr7:106787600-106787800	Active TSS	Hela-S3	cervix
34	chr7:106787600-106787800	Enhancers	Osteobl	bone
35	chr7:106787600-106788000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:106787600-106788200	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr7:106787600-106788400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:106787600-106788400	Enhancers	NHEK	skin

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