Variant report

Variant	rs6943016
Chromosome Location	chr7:106935965-106935966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17153965	1.00[AMR][1000 genomes]
rs56726619	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56867358	1.00[AMR][1000 genomes]
rs56907291	1.00[AMR][1000 genomes]
rs57774882	1.00[AMR][1000 genomes]
rs58020484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59169077	1.00[AMR][1000 genomes]
rs60972363	1.00[AMR][1000 genomes]
rs60980722	1.00[AMR][1000 genomes]
rs61005518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61091872	1.00[AMR][1000 genomes]
rs61123979	1.00[AMR][1000 genomes]
rs61297311	1.00[AMR][1000 genomes]
rs6466161	1.00[AMR][1000 genomes]
rs6942972	1.00[AMR][1000 genomes]
rs6946848	1.00[AMR][1000 genomes]
rs6955667	1.00[AMR][1000 genomes]
rs6955968	1.00[AMR][1000 genomes]
rs6967752	1.00[AMR][1000 genomes]
rs6970022	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970248	1.00[AMR][1000 genomes]
rs6971571	1.00[AMR][1000 genomes]
rs6974296	1.00[AMR][1000 genomes]
rs6975065	1.00[AMR][1000 genomes]
rs7786809	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7787027	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7790797	1.00[AMR][1000 genomes]
rs7790812	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7795905	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7799429	1.00[AMR][1000 genomes]
rs7809874	1.00[AMR][1000 genomes]
rs9969172	1.00[AMR][1000 genomes]
rs9969363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1024903	chr7:106897237-106965091	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034707	chr7:106897237-106966215	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1033064	chr7:106903099-106949640	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1797664	chr7:106930295-106964433	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
2	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
3	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:106890800-106945600	Weak transcription	Aorta	Aorta
9	chr7:106904800-106959800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:106909000-106968600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:106910200-106946400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:106911000-106964200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:106911800-106946000	Weak transcription	Fetal Intestine Small	intestine
14	chr7:106915200-106953400	Weak transcription	Left Ventricle	heart
15	chr7:106918000-106936000	Weak transcription	HSMMtube	muscle
16	chr7:106918000-106939000	Weak transcription	GM12878-XiMat	blood
17	chr7:106918600-106963800	Weak transcription	HSMM	muscle
18	chr7:106921200-106936400	Weak transcription	HUVEC	blood vessel
19	chr7:106921400-106946000	Weak transcription	Fetal Thymus	thymus
20	chr7:106923000-106965800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:106923800-106999400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:106924200-106937400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:106925600-106959800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:106926800-106943000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:106927800-106937600	Weak transcription	Colon Smooth Muscle	Colon
26	chr7:106928000-106942800	Weak transcription	Fetal Heart	heart
27	chr7:106928000-106958800	Weak transcription	HepG2	liver
28	chr7:106928000-106972600	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:106930800-106941400	Weak transcription	Fetal Lung	lung
30	chr7:106931200-106945000	Weak transcription	Primary B cells from cord blood	blood
31	chr7:106931400-106936600	Weak transcription	Psoas Muscle	Psoas
32	chr7:106931400-106962800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:106931600-106945000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:106931800-106939600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:106932200-106945600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:106932200-106946400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr7:106932200-106967400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:106932400-106955600	Weak transcription	Stomach Mucosa	stomach
39	chr7:106932400-106956200	Weak transcription	HMEC	breast
40	chr7:106932600-106946000	Weak transcription	NHEK	skin
41	chr7:106932600-106953400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:106932800-106937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:106933000-106946000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:106933600-106936200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr7:106934000-106942800	Weak transcription	K562	blood
46	chr7:106934200-106936400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:106934200-106937200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:106934200-106937600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:106934200-106940400	Weak transcription	Dnd41	blood
50	chr7:106934200-106945600	Weak transcription	Fetal Intestine Large	intestine

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