Variant report

Variant	rs6967752
Chromosome Location	chr7:106850560-106850561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:106849228..106851031-chr7:106852339..106854731,2	MCF-7	breast:
2	chr7:106850452..106852711-chr7:106857094..106858643,3	K562	blood:
3	chr7:106828812..106831319-chr7:106849503..106851768,3	K562	blood:
4	chr7:106849189..106851803-chr7:106991183..106993127,2	K562	blood:
5	chr7:106838412..106842841-chr7:106847097..106851611,6	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17153965	1.00[AMR][1000 genomes]
rs56726619	1.00[AMR][1000 genomes]
rs56867358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56907291	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57774882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58020484	1.00[AMR][1000 genomes]
rs58860874	1.00[AMR][1000 genomes]
rs59169077	1.00[AMR][1000 genomes]
rs60972363	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60980722	1.00[AMR][1000 genomes]
rs61005518	1.00[AMR][1000 genomes]
rs61091872	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61123979	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61297311	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466161	1.00[AMR][1000 genomes]
rs6942972	1.00[AMR][1000 genomes]
rs6943016	1.00[AMR][1000 genomes]
rs6946848	1.00[ASW][hapmap];0.92[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955667	1.00[AMR][1000 genomes]
rs6955968	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963190	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs6970022	1.00[AMR][1000 genomes]
rs6970248	1.00[AMR][1000 genomes]
rs6971571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6974296	1.00[AMR][1000 genomes]
rs6975065	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786809	1.00[AMR][1000 genomes]
rs7787027	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790812	1.00[AMR][1000 genomes]
rs7794598	0.82[LWK][hapmap]
rs7795905	1.00[AMR][1000 genomes]
rs7809874	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969172	1.00[AMR][1000 genomes]
rs9969363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106817400-106851400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr7:106819600-106851800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr7:106819800-106851600	Strong transcription	Dnd41	blood
4	chr7:106820000-106851200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:106820000-106851600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:106820200-106851200	Strong transcription	Primary B cells from cord blood	blood
7	chr7:106820200-106851800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:106820200-106851800	Strong transcription	Fetal Thymus	thymus
9	chr7:106821000-106854600	Strong transcription	Primary T cells from cord blood	blood
10	chr7:106821200-106851800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr7:106821200-106851800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr7:106821200-106851800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr7:106821400-106851800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:106821600-106851600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr7:106821600-106851800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:106821800-106851400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:106823000-106851200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:106828600-106851800	Strong transcription	Fetal Intestine Large	intestine
19	chr7:106828800-106851200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:106832000-106852400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:106834200-106851600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:106834800-106851000	Strong transcription	Thymus	Thymus
23	chr7:106835200-106851800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:106835400-106852200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:106835800-106851000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:106835800-106851600	Strong transcription	Fetal Muscle Leg	muscle
27	chr7:106836200-106852000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:106836400-106851200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:106837000-106851000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr7:106838200-106850600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:106838200-106865200	Weak transcription	Stomach Mucosa	stomach
32	chr7:106840000-106853400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:106841200-106853000	Weak transcription	Small Intestine	intestine
34	chr7:106841600-106855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:106841800-106851000	Strong transcription	HepG2	liver
36	chr7:106842600-106852000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:106844000-106870400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr7:106844200-106873200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:106844600-106851400	Weak transcription	HUVEC	blood vessel
40	chr7:106844600-106853800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:106844600-106873600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:106844600-106880400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr7:106844600-106888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:106844800-106852000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:106845000-106851800	Strong transcription	Fetal Stomach	stomach
46	chr7:106845600-106851200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:106846200-106870600	Weak transcription	NH-A	brain
49	chr7:106846400-106853400	Weak transcription	Brain Germinal Matrix	brain
50	chr7:106846400-106862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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