Variant report

Variant	rs61140941
Chromosome Location	chr15:39755816-39755817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs58001045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58836677	1.00[AMR][1000 genomes]
rs59550930	1.00[AMR][1000 genomes]
rs59611156	1.00[AMR][1000 genomes]
rs59752089	1.00[AMR][1000 genomes]
rs60077096	1.00[AMR][1000 genomes]
rs60658485	1.00[AMR][1000 genomes]
rs60729119	1.00[AMR][1000 genomes]
rs60772140	1.00[AMR][1000 genomes]
rs60780722	1.00[AMR][1000 genomes]
rs61052847	1.00[AMR][1000 genomes]
rs61294562	1.00[AMR][1000 genomes]
rs61583976	1.00[AMR][1000 genomes]
rs73393465	1.00[AMR][1000 genomes]
rs73393501	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395320	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395324	1.00[AMR][1000 genomes]
rs73395336	1.00[AMR][1000 genomes]
rs73395338	1.00[AMR][1000 genomes]
rs73395340	1.00[AMR][1000 genomes]
rs73397317	1.00[AMR][1000 genomes]
rs73397334	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39753400-39756000	Enhancers	HUVEC	blood vessel
3	chr15:39753600-39758000	Weak transcription	K562	blood
4	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
5	chr15:39754000-39756000	Enhancers	NHLF	lung
6	chr15:39754200-39758000	Weak transcription	Fetal Lung	lung
7	chr15:39754200-39758000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:39754400-39758000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:39754600-39758000	Weak transcription	Ovary	ovary
10	chr15:39754600-39759200	Weak transcription	Spleen	Spleen
11	chr15:39754600-39764600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr15:39754800-39757600	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:39754800-39763400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:39755200-39756000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr15:39755200-39757600	Weak transcription	Right Atrium	heart
16	chr15:39755200-39757800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:39755200-39758000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:39755200-39758000	Weak transcription	Adipose Nuclei	Adipose
19	chr15:39755400-39757400	Weak transcription	Fetal Stomach	stomach
20	chr15:39755400-39757400	Weak transcription	HSMM	muscle
21	chr15:39755400-39757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:39755600-39757400	Weak transcription	NHDF-Ad	bronchial
23	chr15:39755800-39756000	Enhancers	Primary hematopoietic stem cells	blood
24	chr15:39755800-39757400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:39755800-39758200	Weak transcription	Osteobl	bone
26	chr15:39755800-39759400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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