Variant report

Variant	rs73395320
Chromosome Location	chr15:39731388-39731389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39464070..39465044-chr15:39730891..39731615,2	MCF-7	breast:
2	chr15:39462704..39465639-chr15:39730089..39732672,2	MCF-7	breast:
3	chr15:39728845..39734958-chr15:39871002..39874782,8	MCF-7	breast:
4	chr15:39724781..39729630-chr15:39730304..39736268,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs58001045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58836677	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59550930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59611156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59752089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60077096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60658485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60729119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60772140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60780722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61052847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61140941	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61294562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61583976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393465	1.00[AMR][1000 genomes]
rs73393501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395338	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395340	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397317	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397334	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397367	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028168	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39727200-39736600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:39727200-39746800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:39727800-39740200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:39728200-39731400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:39728400-39739400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:39728800-39734000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:39730000-39731600	Enhancers	Left Ventricle	heart
8	chr15:39730000-39731600	Enhancers	Right Ventricle	heart
9	chr15:39730400-39731400	Enhancers	Adipose Nuclei	Adipose
10	chr15:39730400-39731600	Enhancers	Thymus	Thymus
11	chr15:39730400-39731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:39730600-39731400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:39730600-39731400	Enhancers	Lung	lung
14	chr15:39730600-39731600	Enhancers	Fetal Thymus	thymus
15	chr15:39730600-39731600	Enhancers	Ovary	ovary
16	chr15:39730600-39731600	Enhancers	HepG2	liver
17	chr15:39730600-39731800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:39730800-39731600	Enhancers	Small Intestine	intestine
19	chr15:39731000-39736800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:39731200-39731400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr15:39731200-39731400	Enhancers	Stomach Smooth Muscle	stomach
22	chr15:39731200-39731400	Enhancers	Spleen	Spleen
23	chr15:39731200-39731600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr15:39731200-39731600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:39731200-39731800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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