Variant report

Variant	rs61143329
Chromosome Location	chr15:74751711-74751712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74751132..74753039-chr20:50911439..50913832,2	MCF-7	breast:
2	chr15:74749825..74755412-chr15:74831975..74836764,7	K562	blood:
3	chr15:74741955..74744869-chr15:74750008..74755464,5	K562	blood:
4	chr15:74751346..74753406-chr15:74872980..74874906,2	K562	blood:
5	chr15:74750439..74751967-chr15:74752585..74754209,2	MCF-7	breast:
6	chr15:74744211..74746229-chr15:74751385..74754144,2	MCF-7	breast:
7	chr15:74751343..74754967-chr15:74831975..74835233,5	K562	blood:
8	chr15:74749538..74751818-chr15:74752956..74754902,2	K562	blood:
9	chr15:74750184..74752405-chr6:26056455..26058439,2	MCF-7	breast:
10	chr15:74751104..74753940-chr15:74907025..74909601,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000187837	Chromatin interaction
ENSG00000179361	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57283440	0.93[AFR][1000 genomes]
rs59390045	0.88[AFR][1000 genomes]
rs59620060	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
4	chr15:74737800-74752600	Weak transcription	HUVEC	blood vessel
5	chr15:74741800-74752400	Weak transcription	HMEC	breast
6	chr15:74742000-74752600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:74742400-74752000	Weak transcription	Small Intestine	intestine
8	chr15:74742800-74752600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74743000-74752600	Weak transcription	Psoas Muscle	Psoas
10	chr15:74743200-74752600	Weak transcription	Stomach Mucosa	stomach
11	chr15:74743600-74752600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74743600-74753000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74744800-74752400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:74744800-74752600	Weak transcription	NHLF	lung
15	chr15:74744800-74753000	Weak transcription	Esophagus	oesophagus
16	chr15:74745000-74752600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:74745000-74753000	Weak transcription	Aorta	Aorta
18	chr15:74745200-74752400	Weak transcription	Hela-S3	cervix
19	chr15:74745600-74752000	Weak transcription	Right Ventricle	heart
20	chr15:74746000-74752600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:74746000-74752600	Weak transcription	Colonic Mucosa	Colon
22	chr15:74746000-74752600	Weak transcription	Gastric	stomach
23	chr15:74746400-74752400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:74746600-74752600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:74746600-74752600	Weak transcription	Fetal Heart	heart
26	chr15:74746600-74752600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr15:74746600-74752600	Weak transcription	Osteobl	bone
28	chr15:74746600-74752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:74747000-74752600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:74747200-74752400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:74747400-74752600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr15:74747600-74752400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:74747800-74752600	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:74747800-74752600	Weak transcription	Fetal Brain Female	brain
35	chr15:74748000-74752600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:74748000-74752600	Weak transcription	A549	lung
37	chr15:74748000-74752800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:74748200-74752000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:74748200-74752600	Weak transcription	Fetal Kidney	kidney
40	chr15:74749000-74752000	Weak transcription	Primary B cells from cord blood	blood
41	chr15:74749000-74752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:74749000-74752600	Weak transcription	HSMM	muscle
43	chr15:74749000-74752600	Weak transcription	HSMMtube	muscle
44	chr15:74749000-74752600	Weak transcription	K562	blood
45	chr15:74749000-74752600	Weak transcription	NHDF-Ad	bronchial
46	chr15:74749000-74752600	Weak transcription	NHEK	skin
47	chr15:74749200-74752400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:74749200-74752400	Weak transcription	Brain Germinal Matrix	brain
49	chr15:74749200-74752600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:74749200-74752600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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