Variant report

Variant	rs57283440
Chromosome Location	chr15:74740181-74740182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74738044..74740528-chr15:74752608..74755369,2	MCF-7	breast:
2	chr15:74734787..74738096-chr15:74738191..74740451,3	K562	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28362893	1.00[AMR][1000 genomes]
rs28362919	1.00[AMR][1000 genomes]
rs58573460	1.00[AMR][1000 genomes]
rs58590044	0.83[AFR][1000 genomes]
rs59390045	0.95[AFR][1000 genomes]
rs59620060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60032286	0.86[AFR][1000 genomes]
rs61143329	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726800-74740200	Weak transcription	A549	lung
2	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:74727200-74740600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:74727200-74747200	Weak transcription	NHDF-Ad	bronchial
5	chr15:74731200-74741200	Weak transcription	HMEC	breast
6	chr15:74733800-74745600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:74735200-74741400	Weak transcription	Psoas Muscle	Psoas
8	chr15:74735200-74752600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:74735600-74751200	Strong transcription	Thymus	Thymus
10	chr15:74735800-74742000	Weak transcription	K562	blood
11	chr15:74735800-74743200	Weak transcription	Fetal Heart	heart
12	chr15:74735800-74745800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:74736000-74740400	Weak transcription	Small Intestine	intestine
14	chr15:74736000-74741400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:74736000-74745600	Strong transcription	GM12878-XiMat	blood
16	chr15:74736000-74752400	Weak transcription	Fetal Brain Male	brain
17	chr15:74736200-74751200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:74736400-74751400	Strong transcription	Fetal Muscle Leg	muscle
19	chr15:74736600-74745000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:74736600-74745000	Strong transcription	Aorta	Aorta
21	chr15:74736600-74745600	Strong transcription	Right Ventricle	heart
22	chr15:74736600-74745800	Strong transcription	Fetal Thymus	thymus
23	chr15:74736600-74746000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:74736600-74746200	Strong transcription	Primary T cells from cord blood	blood
25	chr15:74736600-74746400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:74736600-74746400	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr15:74736600-74746400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:74736600-74746400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:74736600-74746600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:74736600-74747800	Strong transcription	Fetal Brain Female	brain
31	chr15:74736600-74749800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:74736600-74751000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr15:74736600-74751200	Strong transcription	Fetal Intestine Small	intestine
34	chr15:74736600-74751400	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr15:74736600-74751400	Strong transcription	Fetal Stomach	stomach
36	chr15:74736800-74743600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:74736800-74743600	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr15:74736800-74743800	Strong transcription	Pancreas	Pancrea
39	chr15:74736800-74744000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:74736800-74744200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:74736800-74745000	Strong transcription	Colon Smooth Muscle	Colon
42	chr15:74736800-74745800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:74736800-74746200	Strong transcription	Primary hematopoietic stem cells	blood
44	chr15:74736800-74747400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:74736800-74747600	Strong transcription	Ovary	ovary
46	chr15:74736800-74748000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:74736800-74749000	Strong transcription	Primary B cells from cord blood	blood
48	chr15:74736800-74749400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:74736800-74749600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:74736800-74751200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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