Variant report

Variant	rs60032286
Chromosome Location	chr15:74836179-74836180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:74836040-74836190	GM12878	blood:	n/a	chr15:74836105-74836123
2	CTCF	chr15:74836060-74836210	HRE	kidney:	n/a	chr15:74836105-74836123
3	CTCF	chr15:74836018-74836218	Hela-S3	cervix:	n/a	chr15:74836105-74836123
4	CTCF	chr15:74836060-74836210	HEEpiC	esophagus:	n/a	chr15:74836105-74836123
5	POLR2A	chr15:74835813-74836933	GM12878	blood:	n/a	n/a
6	CTCF	chr15:74836079-74836209	GM20000	blood:	n/a	chr15:74836105-74836123
7	CTCF	chr15:74836016-74836214	GM13976	blood:	n/a	chr15:74836105-74836123
8	BATF	chr15:74835907-74836247	GM12878	blood:	n/a	chr15:74836053-74836064
9	CTCF	chr15:74836039-74836193	Medullo	brain:	n/a	chr15:74836105-74836123
10	CTCF	chr15:74836060-74836210	HCT-116	colon:	n/a	chr15:74836105-74836123
11	CTCF	chr15:74836080-74836230	NHDF-neo	bronchial:	n/a	chr15:74836105-74836123
12	RAD21	chr15:74836006-74836180	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr15:74835638-74836323	A549	lung:	n/a	chr15:74836105-74836123
14	CTCF	chr15:74836060-74836210	NHEK	skin:	n/a	chr15:74836105-74836123
15	CTCF	chr15:74836060-74836210	GM12869	blood:	n/a	chr15:74836105-74836123
16	EBF1	chr15:74836031-74836451	GM12878	blood:	n/a	n/a
17	CTCF	chr15:74836040-74836190	HRPEpiC	eye:	n/a	chr15:74836105-74836123
18	CTCF	chr15:74836040-74836190	HRE	kidney:	n/a	chr15:74836105-74836123
19	CTCF	chr15:74836025-74836213	HepG2	liver:	n/a	chr15:74836105-74836123
20	CTCF	chr15:74836017-74836201	GM10248	blood:	n/a	chr15:74836105-74836123
21	CTCF	chr15:74836040-74836190	SK-N-SH_RA	brain:	n/a	chr15:74836105-74836123
22	CTCF	chr15:74836040-74836190	GM12874	blood:	n/a	chr15:74836105-74836123
23	CTCF	chr15:74836015-74836234	MCF-7	breast:	n/a	chr15:74836105-74836123
24	RAD21	chr15:74835981-74836187	SK-N-SH_RA	brain:	n/a	n/a
25	CTCF	chr15:74835990-74836181	H1-hESC	embryonic stem cell:	n/a	chr15:74836105-74836123
26	CTCF	chr15:74836080-74836230	A549	lung:	n/a	chr15:74836105-74836123
27	SIN3A	chr15:74835769-74836221	GM12878	blood:	n/a	n/a
28	CTCF	chr15:74835942-74836253	K562	blood:	n/a	chr15:74836105-74836123
29	ZNF143	chr15:74835946-74836272	GM12878	blood:	n/a	n/a
30	SMC3	chr15:74836011-74836220	HepG2	liver:	n/a	n/a
31	CTCF	chr15:74836040-74836190	HCPEpiC	choroid plexus:	n/a	chr15:74836105-74836123
32	CTCF	chr15:74836040-74836190	GM12868	blood:	n/a	chr15:74836105-74836123
33	RAD21	chr15:74835921-74836200	GM12878	blood:	n/a	n/a
34	CTCF	chr15:74836040-74836190	WERI-Rb-1	eye:	n/a	chr15:74836105-74836123
35	CTCF	chr15:74836006-74836208	GM10266	blood:	n/a	chr15:74836105-74836123
36	CTCF	chr15:74836060-74836210	GM06990	blood:	n/a	chr15:74836105-74836123
37	CTCF	chr15:74836060-74836210	K562	blood:	n/a	chr15:74836105-74836123
38	CTCF	chr15:74836040-74836190	HFF	foreskin:	n/a	chr15:74836105-74836123
39	CTCF	chr15:74836177-74836217	GM19238	blood:	n/a	n/a
40	CTCF	chr15:74836049-74836193	LNCaP	prostate:	n/a	chr15:74836105-74836123
41	CTCF	chr15:74836040-74836190	GM12867	blood:	n/a	chr15:74836105-74836123
42	CTCF	chr15:74836001-74836236	GM12878	blood:	n/a	chr15:74836105-74836123
43	MAZ	chr15:74835974-74836222	GM12878	blood:	n/a	n/a
44	MXI1	chr15:74832524-74836200	GM12878	blood:	n/a	n/a
45	CTCF	chr15:74836040-74836190	GM12871	blood:	n/a	chr15:74836105-74836123
46	CTCF	chr15:74836038-74836211	MCF-7	breast:	n/a	chr15:74836105-74836123
47	CTCF	chr15:74836040-74836190	HEK293	kidney:	n/a	chr15:74836105-74836123
48	EBF1	chr15:74836082-74836341	GM12878	blood:	n/a	n/a
49	MTA3	chr15:74835798-74836309	GM12878	blood:	n/a	n/a
50	CTCF	chr15:74836060-74836210	HepG2	liver:	n/a	chr15:74836105-74836123

No.	Distal block	Cell Line	Cell type
1	chr15:74749825..74755412-chr15:74831975..74836764,7	K562	blood:
2	chr15:74831828..74838842-chr15:74904667..74909546,11	MCF-7	breast:
3	chr15:74780460..74785045-chr15:74835980..74840156,5	MCF-7	breast:
4	chr15:74830417..74841177-chr15:74901572..74909407,24	K562	blood:
5	chr15:74836156..74839758-chr15:74905845..74909473,6	MCF-7	breast:
6	chr15:74666006..74666589-chr15:74835580..74836342,2	MCF-7	breast:

Variant related genes	Relation type
ARID3B	TF binding region
ENSG00000212279	Chromatin interaction
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000260103	Chromatin interaction
ENSG00000261775	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11547808	0.90[AFR][1000 genomes]
rs16968837	1.00[EUR][1000 genomes]
rs17861081	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861085	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362893	1.00[EUR][1000 genomes]
rs28362919	1.00[EUR][1000 genomes]
rs34255805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35570076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36090160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042870	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57283440	0.86[AFR][1000 genomes]
rs57469673	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58573460	1.00[EUR][1000 genomes]
rs58763676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59390045	0.81[AFR][1000 genomes]
rs59620060	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59773112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60360792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60439061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525627	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60814674	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61204492	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74832000-74836200	Active TSS	GM12878-XiMat	blood
2	chr15:74834000-74836200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
3	chr15:74834000-74838200	Weak transcription	Ovary	ovary
4	chr15:74834200-74838000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:74834400-74836800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:74834400-74837600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:74834400-74838000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:74834400-74838000	Weak transcription	Right Atrium	heart
9	chr15:74834400-74838200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:74834400-74838200	Weak transcription	Colonic Mucosa	Colon
11	chr15:74834400-74838200	Weak transcription	Left Ventricle	heart
12	chr15:74834400-74838200	Weak transcription	Lung	lung
13	chr15:74834400-74838200	Weak transcription	Spleen	Spleen
14	chr15:74834400-74838400	Weak transcription	Aorta	Aorta
15	chr15:74834400-74838400	Weak transcription	Psoas Muscle	Psoas
16	chr15:74834600-74836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:74834600-74836200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr15:74834600-74836200	Weak transcription	Fetal Stomach	stomach
19	chr15:74834600-74836200	Enhancers	HepG2	liver
20	chr15:74834600-74836800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:74834600-74837600	Weak transcription	Brain Angular Gyrus	brain
22	chr15:74834600-74837600	Weak transcription	Brain Anterior Caudate	brain
23	chr15:74834600-74837600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:74834600-74837800	Weak transcription	Brain Substantia Nigra	brain
25	chr15:74834600-74837800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:74834600-74838000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:74834600-74838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:74834600-74842800	Weak transcription	Esophagus	oesophagus
29	chr15:74834800-74836400	Enhancers	Primary B cells from peripheral blood	blood
30	chr15:74834800-74836400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:74834800-74836400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:74834800-74836800	Enhancers	Primary T cells fromperipheralblood	blood
33	chr15:74834800-74837000	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr15:74834800-74837600	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:74834800-74837800	Weak transcription	Stomach Mucosa	stomach
36	chr15:74834800-74838000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:74834800-74838000	Weak transcription	Adipose Nuclei	Adipose
38	chr15:74834800-74838000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:74834800-74838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:74834800-74838000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:74834800-74838200	Weak transcription	NHLF	lung
42	chr15:74834800-74838600	Enhancers	Placenta	Placenta
43	chr15:74834800-74838800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr15:74835000-74836200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:74835000-74836200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:74835000-74836200	Bivalent/Poised TSS	Thymus	Thymus
47	chr15:74835000-74836400	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:74835000-74836400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:74835000-74837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr15:74835000-74837400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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