Variant report

Variant	rs16968837
Chromosome Location	chr15:74727953-74727954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74727953-74728184	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74724949..74728351-chr15:74752030..74754909,4	K562	blood:
2	chr15:74720298..74721801-chr15:74727091..74728921,2	MCF-7	breast:
3	chr15:74727453..74729431-chr15:74732496..74734261,2	K562	blood:
4	chr15:74665092..74667430-chr15:74726842..74729796,2	K562	blood:
5	chr15:74727843..74730668-chr15:74907204..74909130,2	K562	blood:
6	chr15:74694166..74696263-chr15:74727466..74729822,2	MCF-7	breast:
7	chr15:74666968..74670060-chr15:74726920..74730762,3	K562	blood:

No data

Variant related genes	Relation type
SEMA7A	TF binding region
ENSG00000247240	Chromatin interaction
ENSG00000138629	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12593390	0.96[AFR][1000 genomes]
rs12594738	0.94[AFR][1000 genomes]
rs1370485	0.96[AFR][1000 genomes]
rs28362867	0.96[AFR][1000 genomes]
rs28362876	0.96[AFR][1000 genomes]
rs28362883	0.96[AFR][1000 genomes]
rs28362885	0.96[AFR][1000 genomes]
rs28362893	1.00[EUR][1000 genomes]
rs28362919	1.00[EUR][1000 genomes]
rs28597930	1.00[EUR][1000 genomes]
rs351169	1.00[JPT][hapmap]
rs351205	1.00[JPT][hapmap]
rs35646069	1.00[EUR][1000 genomes]
rs3747478	0.96[AFR][1000 genomes]
rs56042870	1.00[EUR][1000 genomes]
rs57469673	1.00[EUR][1000 genomes]
rs58286051	1.00[EUR][1000 genomes]
rs58573460	1.00[EUR][1000 genomes]
rs58763676	1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59620060	1.00[EUR][1000 genomes]
rs59773112	1.00[EUR][1000 genomes]
rs60032286	1.00[EUR][1000 genomes]
rs60360792	1.00[EUR][1000 genomes]
rs60439061	1.00[EUR][1000 genomes]
rs60525627	1.00[EUR][1000 genomes]
rs60814674	1.00[EUR][1000 genomes]
rs61204492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	nsv904355	chr15:74697084-74728149	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv904356	chr15:74697084-74729603	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904360	chr15:74709071-74728149	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv904364	chr15:74709975-74728149	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv904367	chr15:74710125-74728149	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv904368	chr15:74711122-74728149	Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv542433	chr15:74714265-74745033	Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv904371	chr15:74719249-74731330	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74726200-74736800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:74726400-74728200	Enhancers	Spleen	Spleen
3	chr15:74726400-74737200	Weak transcription	Hela-S3	cervix
4	chr15:74726800-74728200	Enhancers	Primary B cells from cord blood	blood
5	chr15:74726800-74728600	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:74726800-74728800	Enhancers	Fetal Brain Male	brain
7	chr15:74726800-74729000	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:74726800-74729000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:74726800-74730600	Weak transcription	NHEK	skin
10	chr15:74726800-74730800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:74726800-74730800	Weak transcription	HMEC	breast
12	chr15:74726800-74736800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:74726800-74737400	Weak transcription	Esophagus	oesophagus
14	chr15:74726800-74738600	Weak transcription	Fetal Lung	lung
15	chr15:74726800-74740200	Weak transcription	A549	lung
16	chr15:74726800-74752800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:74727000-74728600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:74727000-74729000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:74727000-74729200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:74727000-74731200	Enhancers	K562	blood
21	chr15:74727000-74734400	Weak transcription	Pancreas	Pancrea
22	chr15:74727000-74736600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:74727000-74736600	Weak transcription	Right Atrium	heart
24	chr15:74727000-74736800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:74727000-74736800	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:74727000-74737400	Weak transcription	Lung	lung
27	chr15:74727000-74737600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:74727200-74728000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:74727200-74728000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:74727200-74728000	Weak transcription	NH-A	brain
31	chr15:74727200-74728200	Enhancers	Fetal Brain Female	brain
32	chr15:74727200-74728800	Enhancers	Thymus	Thymus
33	chr15:74727200-74729200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:74727200-74729800	Enhancers	Fetal Thymus	thymus
35	chr15:74727200-74730600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:74727200-74730600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:74727200-74730800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:74727200-74731200	Weak transcription	HSMMtube	muscle
39	chr15:74727200-74735000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:74727200-74735200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:74727200-74735400	Weak transcription	Brain Anterior Caudate	brain
42	chr15:74727200-74735600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:74727200-74736600	Weak transcription	Primary T cells from cord blood	blood
44	chr15:74727200-74736600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:74727200-74736800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:74727200-74736800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:74727200-74737200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:74727200-74737200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:74727200-74737200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr15:74727200-74737800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links