Variant report

Variant	rs59773112
Chromosome Location	chr15:74965833-74965834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74906117..74908575-chr15:74963324..74967354,3	MCF-7	breast:
2	chr15:74964780..74966659-chr15:75229631..75231621,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11547808	1.00[AFR][1000 genomes]
rs16968837	1.00[EUR][1000 genomes]
rs17861081	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861085	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362893	1.00[EUR][1000 genomes]
rs28362919	1.00[EUR][1000 genomes]
rs34255805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35570076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36090160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57469673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58573460	1.00[EUR][1000 genomes]
rs58763676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59620060	1.00[EUR][1000 genomes]
rs60032286	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60360792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60439061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60814674	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61204492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74025855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74936000-74968800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74946000-74966200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74947800-74970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:74957000-74987000	Weak transcription	HMEC	breast
5	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
6	chr15:74957200-74968400	Weak transcription	Small Intestine	intestine
7	chr15:74957400-74968800	Weak transcription	Stomach Mucosa	stomach
8	chr15:74957400-74987200	Weak transcription	A549	lung
9	chr15:74957800-74967600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:74958200-74967400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:74958400-74967400	Strong transcription	Primary B cells from cord blood	blood
12	chr15:74958600-74967400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:74958800-74967600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74959000-74967600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:74959000-74967600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:74959200-74967600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:74959800-74967400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:74960000-74967400	Strong transcription	Liver	Liver
19	chr15:74960000-74967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:74960000-74967600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:74960000-74967600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:74960000-74967600	Strong transcription	Brain Anterior Caudate	brain
23	chr15:74960200-74966200	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:74960200-74966800	Strong transcription	Fetal Brain Female	brain
25	chr15:74960200-74967400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:74960200-74967600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:74960200-74967600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:74960200-74967600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:74960200-74967600	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:74960200-74967600	Strong transcription	Ovary	ovary
31	chr15:74960400-74967600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:74960400-74967600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:74960600-74967600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:74960800-74967400	Strong transcription	Fetal Intestine Small	intestine
35	chr15:74960800-74967400	Strong transcription	Fetal Stomach	stomach
36	chr15:74961200-74967600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr15:74961800-74967400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:74961800-74967600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:74961800-74967600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr15:74962000-74967200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:74962000-74967400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:74962200-74967600	Strong transcription	Primary T cells from cord blood	blood
43	chr15:74962400-74967400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:74962400-74967600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:74962400-74967600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:74962600-74967200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:74962600-74967400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:74962800-74966000	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:74962800-74966200	Strong transcription	Adipose Nuclei	Adipose
50	chr15:74962800-74967400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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