Variant report

Variant	rs74025855
Chromosome Location	chr15:75129609-75129610
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
2	chr15:75126464..75129704-chr15:75315770..75318038,3	MCF-7	breast:
3	chr15:75091213..75094124-chr15:75128179..75130318,2	K562	blood:
4	chr15:75108356..75114001-chr15:75126388..75130558,9	MCF-7	breast:
5	chr15:75127539..75130871-chr15:75182053..75185205,4	MCF-7	breast:
6	chr15:75126901..75129959-chr15:75191253..75194368,3	K562	blood:
7	chr15:75126973..75129678-chr15:75164205..75165961,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction
ENSG00000138621	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000260824	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17861081	1.00[EUR][1000 genomes]
rs17861082	1.00[EUR][1000 genomes]
rs17861085	1.00[EUR][1000 genomes]
rs17861107	1.00[EUR][1000 genomes]
rs17861108	1.00[EUR][1000 genomes]
rs17861121	1.00[EUR][1000 genomes]
rs34255805	1.00[EUR][1000 genomes]
rs35570076	1.00[EUR][1000 genomes]
rs35646069	1.00[EUR][1000 genomes]
rs36090160	1.00[EUR][1000 genomes]
rs45527133	1.00[EUR][1000 genomes]
rs4986880	1.00[EUR][1000 genomes]
rs4986881	1.00[EUR][1000 genomes]
rs4986882	1.00[EUR][1000 genomes]
rs4986884	1.00[EUR][1000 genomes]
rs56042870	1.00[EUR][1000 genomes]
rs57469673	1.00[EUR][1000 genomes]
rs58286051	1.00[EUR][1000 genomes]
rs58763676	1.00[EUR][1000 genomes]
rs59773112	1.00[EUR][1000 genomes]
rs60360792	1.00[EUR][1000 genomes]
rs60439061	1.00[EUR][1000 genomes]
rs60525627	1.00[EUR][1000 genomes]
rs60814674	1.00[EUR][1000 genomes]
rs61204492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv904382	chr15:75129594-75140854	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75121400-75132000	Weak transcription	A549	lung
2	chr15:75121400-75134600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:75121800-75134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:75122600-75131200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:75123200-75130600	Weak transcription	Osteobl	bone
6	chr15:75123800-75134200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:75123800-75134200	Weak transcription	Primary B cells from cord blood	blood
8	chr15:75123800-75134400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:75123800-75134400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:75123800-75134400	Weak transcription	HSMM	muscle
11	chr15:75124000-75134400	Weak transcription	HSMMtube	muscle
12	chr15:75124200-75132200	Weak transcription	K562	blood
13	chr15:75124400-75134400	Weak transcription	Fetal Lung	lung
14	chr15:75124800-75134400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:75124800-75134400	Weak transcription	Psoas Muscle	Psoas
16	chr15:75125000-75134000	Weak transcription	Stomach Mucosa	stomach
17	chr15:75125000-75134600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:75125200-75134800	Weak transcription	Aorta	Aorta
19	chr15:75126200-75132800	Weak transcription	Hela-S3	cervix
20	chr15:75126200-75134400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:75126400-75129800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr15:75126400-75132800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:75126600-75134200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:75126600-75134400	Weak transcription	GM12878-XiMat	blood
25	chr15:75126800-75134600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:75127200-75130400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:75127200-75133400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:75127400-75132000	Strong transcription	Fetal Intestine Small	intestine
29	chr15:75127600-75131200	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:75127600-75132400	Strong transcription	Fetal Brain Female	brain
31	chr15:75127600-75133600	Strong transcription	Brain Germinal Matrix	brain
32	chr15:75127800-75131000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:75127800-75132200	Strong transcription	Esophagus	oesophagus
34	chr15:75127800-75132800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr15:75127800-75132800	Strong transcription	Right Ventricle	heart
36	chr15:75127800-75133000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:75127800-75133000	Strong transcription	Fetal Muscle Leg	muscle
38	chr15:75127800-75133000	Strong transcription	Pancreas	Pancrea
39	chr15:75127800-75133400	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:75127800-75133800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:75127800-75133800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:75127800-75133800	Strong transcription	Fetal Stomach	stomach
43	chr15:75128000-75130000	Strong transcription	Ovary	ovary
44	chr15:75128000-75130200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:75128000-75130800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:75128000-75131400	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr15:75128000-75132200	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:75128000-75132400	Strong transcription	Brain Hippocampus Middle	brain
49	chr15:75128000-75132400	Strong transcription	Fetal Intestine Large	intestine
50	chr15:75128000-75132800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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