Variant report

Variant	rs17861108
Chromosome Location	chr15:75020247-75020248
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr15:75020064-75020673	ECC-1	luminal epithelium:	n/a	n/a
2	ZNF263	chr15:75020056-75020601	HEK293-T-REx	kidney:	n/a	n/a
3	USF2	chr15:75020094-75020350	Hela-S3	cervix:	n/a	chr15:75020137-75020148
4	MAX	chr15:75020187-75020270	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr15:75020193-75020341	HepG2	liver:	n/a	n/a
6	NFIC	chr15:75020024-75020740	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75014713..75016571-chr15:75018498..75020290,2	MCF-7	breast:
2	chr15:75018522..75021766-chr15:75024358..75026673,3	MCF-7	breast:
3	chr15:75008995..75011604-chr15:75018955..75020856,2	K562	blood:

Variant related genes	Relation type
CYP1A1	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11547808	0.85[AFR][1000 genomes]
rs17861081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861121	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34255805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35570076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646069	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36090160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527133	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57469673	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286051	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58763676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59620060	1.00[EUR][1000 genomes]
rs59773112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60032286	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60360792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60439061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60814674	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61204492	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74025855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75018600-75021000	Enhancers	Fetal Heart	heart
2	chr15:75019200-75020400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:75019200-75020400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr15:75019200-75020400	Enhancers	Left Ventricle	heart
5	chr15:75019200-75020400	Enhancers	A549	lung
6	chr15:75019200-75020600	Enhancers	Right Ventricle	heart
7	chr15:75019400-75020400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr15:75019400-75020400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:75019400-75020400	Enhancers	Lung	lung
10	chr15:75019400-75020600	Enhancers	Liver	Liver
11	chr15:75019400-75020600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr15:75019400-75020600	Enhancers	Hela-S3	cervix
13	chr15:75019400-75020600	Enhancers	HepG2	liver
14	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
15	chr15:75019600-75020600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
16	chr15:75019600-75022200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:75020000-75020400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:75020000-75020400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:75020000-75020400	Bivalent Enhancer	Brain Hippocampus Middle	brain
20	chr15:75020000-75020400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
21	chr15:75020000-75020400	Enhancers	Psoas Muscle	Psoas
22	chr15:75020000-75020400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
23	chr15:75020200-75020400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:75020200-75020400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
25	chr15:75020200-75020400	Enhancers	Brain Substantia Nigra	brain
26	chr15:75020200-75020400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
27	chr15:75020200-75020400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr15:75020200-75020400	Bivalent Enhancer	NHDF-Ad	bronchial
29	chr15:75020200-75020600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast

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