Variant report

Variant	rs59620060
Chromosome Location	chr15:74776392-74776393
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74752022..74754728-chr15:74775931..74778134,2	K562	blood:

Variant related genes	Relation type
ENSG00000138629	Chromatin interaction
ENSG00000247240	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16968837	1.00[EUR][1000 genomes]
rs17861081	1.00[EUR][1000 genomes]
rs17861082	1.00[EUR][1000 genomes]
rs17861085	1.00[EUR][1000 genomes]
rs17861107	1.00[EUR][1000 genomes]
rs17861108	1.00[EUR][1000 genomes]
rs17861121	1.00[EUR][1000 genomes]
rs28362893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34255805	1.00[EUR][1000 genomes]
rs35570076	1.00[EUR][1000 genomes]
rs35646069	1.00[EUR][1000 genomes]
rs36090160	1.00[EUR][1000 genomes]
rs45527133	1.00[EUR][1000 genomes]
rs4986880	1.00[EUR][1000 genomes]
rs4986881	1.00[EUR][1000 genomes]
rs4986882	1.00[EUR][1000 genomes]
rs4986884	1.00[EUR][1000 genomes]
rs56042870	1.00[EUR][1000 genomes]
rs57283440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57469673	1.00[EUR][1000 genomes]
rs58286051	1.00[EUR][1000 genomes]
rs58573460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58590044	0.83[AFR][1000 genomes]
rs58763676	1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59390045	0.95[AFR][1000 genomes]
rs59773112	1.00[EUR][1000 genomes]
rs60032286	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60360792	1.00[EUR][1000 genomes]
rs60439061	1.00[EUR][1000 genomes]
rs60525627	1.00[EUR][1000 genomes]
rs60814674	1.00[EUR][1000 genomes]
rs61143329	0.93[AFR][1000 genomes]
rs61204492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
5	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
7	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:74755200-74789200	Weak transcription	NHEK	skin
12	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
17	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:74760800-74785600	Weak transcription	Ovary	ovary
19	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
20	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:74763600-74782400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:74765200-74782000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:74765400-74781000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:74765400-74782200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:74766200-74781600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:74766200-74782400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:74767400-74781800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:74767600-74781000	Weak transcription	Dnd41	blood
31	chr15:74767600-74781400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:74767600-74781600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:74767600-74782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:74767600-74804800	Weak transcription	Lung	lung
35	chr15:74768000-74781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:74768400-74781800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:74768400-74781800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:74770000-74796600	Weak transcription	HepG2	liver
41	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:74771400-74776800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:74772400-74779200	Weak transcription	Stomach Mucosa	stomach
44	chr15:74772800-74782000	Weak transcription	Thymus	Thymus
45	chr15:74774000-74781600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:74774000-74781600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:74774000-74782400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:74774000-74782400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:74774000-74789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle

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