Variant report

Variant	rs59046618
Chromosome Location	chr15:74757456-74757457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr15:74757330-74757522	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74756312..74758135-chr15:74907510..74909109,2	MCF-7	breast:

Variant related genes	Relation type
UBL7	TF binding region
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16968837	1.00[EUR][1000 genomes]
rs17861081	1.00[EUR][1000 genomes]
rs17861082	1.00[EUR][1000 genomes]
rs17861085	1.00[EUR][1000 genomes]
rs17861107	1.00[EUR][1000 genomes]
rs17861108	1.00[EUR][1000 genomes]
rs17861121	1.00[EUR][1000 genomes]
rs28362893	1.00[EUR][1000 genomes]
rs28362919	1.00[EUR][1000 genomes]
rs28597930	1.00[EUR][1000 genomes]
rs34255805	1.00[EUR][1000 genomes]
rs35570076	1.00[EUR][1000 genomes]
rs35646069	1.00[EUR][1000 genomes]
rs36090160	1.00[EUR][1000 genomes]
rs45527133	1.00[EUR][1000 genomes]
rs4986880	1.00[EUR][1000 genomes]
rs4986881	1.00[EUR][1000 genomes]
rs4986882	1.00[EUR][1000 genomes]
rs4986884	1.00[EUR][1000 genomes]
rs56042870	1.00[EUR][1000 genomes]
rs57469673	1.00[EUR][1000 genomes]
rs58286051	1.00[EUR][1000 genomes]
rs58573460	1.00[EUR][1000 genomes]
rs58763676	1.00[EUR][1000 genomes]
rs59620060	1.00[EUR][1000 genomes]
rs59773112	1.00[EUR][1000 genomes]
rs60032286	1.00[EUR][1000 genomes]
rs60360792	1.00[EUR][1000 genomes]
rs60439061	1.00[EUR][1000 genomes]
rs60525627	1.00[EUR][1000 genomes]
rs60814674	1.00[EUR][1000 genomes]
rs61204492	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
2	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754000-74767000	Weak transcription	Spleen	Spleen
2	chr15:74754200-74760400	Weak transcription	Ovary	ovary
3	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
4	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:74754600-74757600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:74754600-74759000	Weak transcription	Fetal Stomach	stomach
7	chr15:74754600-74760400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:74754600-74760600	Weak transcription	Primary T cells from cord blood	blood
9	chr15:74754600-74760600	Weak transcription	HSMM	muscle
10	chr15:74754600-74760800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:74754600-74760800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:74754600-74760800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:74754600-74762600	Weak transcription	Pancreas	Pancrea
14	chr15:74754600-74762800	Weak transcription	Right Ventricle	heart
15	chr15:74754600-74764400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:74754600-74766400	Weak transcription	Fetal Kidney	kidney
17	chr15:74754600-74766800	Weak transcription	Lung	lung
18	chr15:74754600-74767000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:74754600-74767200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:74754600-74769000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:74754600-74773800	Weak transcription	Gastric	stomach
25	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
26	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
27	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
30	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
32	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:74754800-74758800	Weak transcription	Osteobl	bone
36	chr15:74754800-74760600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr15:74754800-74760800	Weak transcription	Adipose Nuclei	Adipose
38	chr15:74754800-74762200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:74754800-74765600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:74754800-74768200	Weak transcription	NHDF-Ad	bronchial
41	chr15:74754800-74770000	Weak transcription	NHLF	lung
42	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:74755000-74760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr15:74755200-74758200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:74755200-74760200	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:74755200-74760200	Weak transcription	Fetal Thymus	thymus
48	chr15:74755200-74760400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:74755200-74760400	Weak transcription	Fetal Intestine Small	intestine
50	chr15:74755200-74760600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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