Variant report

Variant	rs61204492
Chromosome Location	chr15:74939162-74939163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74937309..74940220-chr15:75050059..75052709,2	K562	blood:
2	chr15:74932057..74934651-chr15:74938157..74940129,2	MCF-7	breast:
3	chr15:74938979..74941178-chr15:75046252..75049001,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11547808	1.00[AFR][1000 genomes]
rs16968837	1.00[EUR][1000 genomes]
rs17861081	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861085	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17861121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28362893	1.00[EUR][1000 genomes]
rs28362919	1.00[EUR][1000 genomes]
rs34255805	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35570076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35646069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36090160	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986880	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4986884	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56042870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57469673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58286051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58573460	1.00[EUR][1000 genomes]
rs58763676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59046618	1.00[EUR][1000 genomes]
rs59620060	1.00[EUR][1000 genomes]
rs59773112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60032286	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60360792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60439061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60814674	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74025855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	esv1814078	chr15:74884447-74948063	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv457204	chr15:74885091-74948063	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv569991	chr15:74885091-74948063	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv1047943	chr15:74885329-74940857	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv974699	chr15:74936246-74941209	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74920800-74945600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:74921800-74963400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:74928800-74943600	Weak transcription	NHDF-Ad	bronchial
4	chr15:74929200-74963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:74932800-74945600	Weak transcription	HMEC	breast
6	chr15:74933000-74956200	Weak transcription	A549	lung
7	chr15:74933200-74942000	Weak transcription	GM12878-XiMat	blood
8	chr15:74933200-74943600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:74933200-74943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:74933200-74947400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:74933200-74963400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr15:74933400-74942600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:74933400-74963200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:74933600-74945600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:74934000-74955800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:74934200-74941200	Strong transcription	Fetal Stomach	stomach
17	chr15:74934400-74962400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:74934800-74945600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:74935200-74943400	Weak transcription	Fetal Thymus	thymus
20	chr15:74935400-74940000	Weak transcription	Placenta	Placenta
21	chr15:74935400-74945600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:74935400-74963400	Weak transcription	Aorta	Aorta
23	chr15:74935600-74940000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:74935600-74942200	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:74935800-74940200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:74935800-74942400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:74935800-74943600	Weak transcription	Fetal Kidney	kidney
28	chr15:74936000-74940000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:74936000-74940200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr15:74936000-74940200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:74936000-74941000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr15:74936000-74942400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr15:74936000-74943600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:74936000-74943600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:74936000-74945000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:74936000-74945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:74936000-74945600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr15:74936000-74950200	Weak transcription	Gastric	stomach
39	chr15:74936000-74963000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:74936000-74968800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr15:74936200-74939600	Weak transcription	Psoas Muscle	Psoas
42	chr15:74936200-74939800	Weak transcription	Fetal Brain Female	brain
43	chr15:74936200-74940000	Weak transcription	Esophagus	oesophagus
44	chr15:74936200-74942000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:74936200-74942200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:74936200-74942200	Weak transcription	Brain Germinal Matrix	brain
47	chr15:74936200-74942400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:74936200-74942400	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:74936200-74942600	Weak transcription	Liver	Liver
50	chr15:74936200-74943400	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links