Variant report

Variant	rs6114859
Chromosome Location	chr20:24721538-24721539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24716951..24718615-chr20:24720507..24722408,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1109682	0.81[AFR][1000 genomes]
rs56888172	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57470115	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57844623	1.00[AMR][1000 genomes]
rs57923170	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58149951	0.89[AMR][1000 genomes]
rs58679653	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59254947	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60419449	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106949	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6114863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114869	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114871	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6114872	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6114874	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61190938	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7260865	1.00[AMR][1000 genomes]
rs73331358	1.00[AMR][1000 genomes]
rs73331396	0.81[AFR][1000 genomes]
rs73331399	0.81[AFR][1000 genomes]
rs73333403	0.81[AFR][1000 genomes]
rs73333424	0.82[AFR][1000 genomes]
rs73333459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333500	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73335424	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73335427	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73335453	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7360504	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7360533	0.81[AFR][1000 genomes]
rs8116690	0.90[YRI][hapmap];0.91[AFR][1000 genomes]
rs8120183	0.81[AFR][1000 genomes]
rs8123123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8123361	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs911173	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24716200-24723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:24717400-24727600	Enhancers	Fetal Thymus	thymus
3	chr20:24718200-24723400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr20:24718400-24723800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24720000-24722400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:24720000-24726600	Weak transcription	Spleen	Spleen
7	chr20:24721200-24721800	Flanking Active TSS	Thymus	Thymus
8	chr20:24721400-24722400	Enhancers	Dnd41	blood
9	chr20:24721400-24726000	Weak transcription	Fetal Kidney	kidney

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